Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04467 ATGTCCACAGACGAGATCACAAAAATAGAAGAAGGTGGAATTAAGGCACAAAGGGATTCTGGGTGTTGCGGTTCTCCTGGGGTTGTTAGTGTCATACAAAAGGTAATAGCAGAGGTAATAGGGACATACTTCTTAATATTTGCAGGGTGTTCCTCTGTTGTTCTGAATAAAATAGAACAGAGTAAAGGGACAATAACATTTCCAGGAATTTGTGTGGTATGGGGTCTAATAGTGATGGTTTTGGTTTATGCTCTTGGTCACATCTCTGGTGCTCATTTCAATCCTGCAGTAACCGTTAGCTTTGCCATTTATCGTCATTTCCCTCTGAAACAGGTGCCATTGTATATTATTGCACAGGTCCTAGGATCTATCCTTGCTAGTGGGACATTGTACCTTCTCTATGATGATCTAAATGAAACAACTTATTTTGGAACTGTACCAACAGGATCTGATGTTCAATCCCTTGTTGTTGAGATCCTCACATCATTTCTCTTGATGTTTGTTGTCTCTGCGGTTTCTACAGACAATAGAGCAGTTAGTATATTGAGTCTACTTTTTTTTTTAAGTTTTTCTTGCATTTGTTTCAGTTTTAACATTCATTTCAAACAGATTGGAGAATTGGCAGGGATTGCTGTTGGGATGACAATCATAATAGACGTCTTCATTGCTGGGCCTGTATCAGGGGCATCAATGAACCCAGCTAGAAGCCTTGGACCTGCAGTGGTGATGCATATCTACAATGGATTTTGGGTTTATATTGTTGGACCATTTGTTGGTGCAATACTAGGTGCCTCAGCCTACAACCTTATTAGATTTACTGACAAACCACTTAGAGAACTTAGTGCAAGTTCAAGTTTCTTCAAAAGATCAAGTTTTCGGTAG 882 0.3946 MSTDEITKIEEGGIKAQRDSGCCGSPGVVSVIQKVIAEVIGTYFLIFAGCSSVVLNKIEQSKGTITFPGICVVWGLIVMVLVYALGHISGAHFNPAVTVSFAIYRHFPLKQVPLYIIAQVLGSILASGTLYLLYDDLNETTYFGTVPTGSDVQSLVVEILTSFLLMFVVSAVSTDNRAVSILSLLFFLSFSCICFSFNIHFKQIGELAGIAVGMTIIIDVFIAGPVSGASMNPARSLGPAVVMHIYNGFWVYIVGPFVGAILGASAYNLIRFTDKPLRELSASSSFFKRSSFR. 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04467 293 SUPERFAMILY Aquaporin-like 30 278 IPR023271 -
Seca11g04467 293 Gene3D Glycerol uptake facilitator protein. 27 282 IPR023271 -
Seca11g04467 293 Pfam Major intrinsic protein 29 195 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca11g04467 293 Pfam Major intrinsic protein 203 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca11g04467 293 CDD MIP 33 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca11g04467 293 ProSitePatterns MIP family signature. 92 100 IPR022357 -
Seca11g04467 293 PANTHER AQUAPORIN NIP2-1 20 285 IPR034294 -
Seca11g04467 293 PRINTS Major intrinsic protein family signature 213 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca11g04467 293 PRINTS Major intrinsic protein family signature 111 130 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca11g04467 293 PRINTS Major intrinsic protein family signature 157 175 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca11g04467 293 PRINTS Major intrinsic protein family signature 74 98 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca11g04467 293 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca11g04467 293 PRINTS Major intrinsic protein family signature 33 52 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04467 Seca-Chr11 127271410 127273669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04467 4 288 Major Intrinsic Protein MIP AT5G37820 57.292 1.03e-110 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04467 K09874 - gmx:100819179 372.474