Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04465 ATGGCGGTTTTACCTAGTAGCTCCTCCAGCTTGGAATTGACCATATCTGTCCCAGGCTTTGCTTCTTCACCAACTCTTCTTCCCTCATCATCTGTATCTATTACAGTGAAAGAGTTGGACATAAACCAAGCACCGTTAGAAGAAGAATGGATATCATCAAACATGGAAGAGGAAGAAGAAAGCTGCAATGGAGACCCTCCCCGCAAGAAACTCCGTCTCACAAAGGAACAGTCCCGTCTCCTTGAAGAAAGCTTTAGACAAAACCATACTTTAAACCCAAAGCAGAAAGAGTCTTTGGCAATGCAGCTGAAACTCCGACCAAGGCAAGTGGAGGTGTGGTTTCAGAACCGTAGGGCCAGGAGCAAGCTGAAGCAGACAGAGATGGAATGTGAGTACCTGAAGAGGTGGTTTGGGTCACTGACAGAACAGAACCGGAGGCTGCAAAGGGAAGTGGAGGAACTGAGGGCTATGAAAGTGGGTCCACCCACTGTCTTATCCCCTCACACTTGCGAGCCACTACCAGCATCCACCCTAACCATGTGTCCCCGCTGTGAGCGTGTCACCACCACCGTCGCCGCAGCAAACGTCGACAAAGCAGCCACCGCCGCCGCCACTTTGTCCCCTAAAGTGCCCACGCCTGCCCTTCAATCGCGTCAACCTTCTGCGGCTTGTTGA 675 0.5141 MAVLPSSSSSLELTISVPGFASSPTLLPSSSVSITVKELDINQAPLEEEWISSNMEEEEESCNGDPPRKKLRLTKEQSRLLEESFRQNHTLNPKQKESLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVLSPHTCEPLPASTLTMCPRCERVTTTVAAANVDKAATAAATLSPKVPTPALQSRQPSAAC. 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04465 224 Pfam Homeobox associated leucine zipper 124 158 IPR003106 GO:0006355|GO:0043565
Seca11g04465 224 Pfam Homeodomain 68 122 IPR001356 GO:0003677
Seca11g04465 224 Coils Coil 137 157 - -
Seca11g04465 224 Gene3D - 61 132 - -
Seca11g04465 224 ProSitePatterns 'Homeobox' domain signature. 99 122 IPR017970 GO:0000981|GO:0006355
Seca11g04465 224 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 31 206 - -
Seca11g04465 224 FunFam Homeobox-leucine zipper protein 18 52 129 - -
Seca11g04465 224 SUPERFAMILY Homeodomain-like 56 125 IPR009057 -
Seca11g04465 224 CDD homeodomain 67 125 IPR001356 GO:0003677
Seca11g04465 224 SMART halz 124 167 IPR003106 GO:0006355|GO:0043565
Seca11g04465 224 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677
Seca11g04465 224 SMART HOX_1 66 128 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04465 Seca-Chr11 127065984 127069864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04465 36 206 Homeobox Transcription Factor Family AT1G70920 60.795 3.55e-61 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca11g04465 Homeodomain 3.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04465 K09338 - gmx:100775341 355.525