Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04447 ATGGATGATGAAGTTGTTCAGCGAGTGTTCCATGAAGGAGGACGCGATTACTTCCAACAGCAACCTTCAACTTCTTCGTCTTCATCCTCCATCCTCCAATCTCTCCCTCTCCATGTGTCTTTTGATCATGGATATTATTTATTGGTAAAATCTATCCAAGAACTCCGAGAGAAAAAGGAAGGCCTTGTTACAGTTGGCATTGGTGGTCCAAGTGGTTCTGGTAAAACAAGCTTAGCAGAAAAGGTGGCATCTGTTATTGGTTGTACTGTTATATCGATGGAGAATTATTGTGATGGGGTTGGCGAAATGAATGATCTGGATTCTATTGATTTTGATACCCTGATCAAGAATCTTGAGGATTTGACAAAAGGTGATGATACATTAATTCCAGAGTTTGACTACCAGCAAAAGAGGCGTGTTTGCTATAAAACAATAAAGAGTGCTTCATCTGGGGTGGTAATTGTTGATGGTACATATGCATTGCATGCAAAACTGCGGTCTTTACTGGATATTCGAGTTGCTGTGGTTGGTGGTGTTCATTTTAGCCTGCTTTCTAAAGTTCGCTATGATATTGGAGATTCTTGTTCACTGGATTACCTTATAGATAGCATTTTTCCATTATTTAGGAAGCACATTGAGCCAGATCTTCATCATGCACAGATCCGGATAAACAACAGCTTTGTCTCATCATTTAGAGAGGCAATCTACAAGGTTAAATGCAGAAGTGAGTCTTCAGATGGACATTCAGATTCTTCCTCTCAAGGAAATGAAGCCCAAACAGATAATTTTATTGAAATGTACCTTAGACCGCCTTCGGCTAGCGAAGAAGCAAGGATAAATGATTGGATCAAAGTGAGGCAGTCTGGAATTAGGTATTATTTATCACTTGGTGACCAGAGGATTGTTGACAAAAATTTCATTATCAGGCCCAAAGCTGAGTTTGAGGTTGGGCGAATGACATTGGGTGGATTGCTGGCTCTTGGGTACATTGTTGTGGTTAGTTATAAACGTGCATCCACAACTGTCAATAATGGCAAGGTTTCAATATCTCTTGAAACCATTGATGCTCTTGGTGAGACATTCATGGTGATGAGAGGAACTGATAGGAAGACTGTTGGAACAGAAGCTTTGAGGATGGGTATCAGTGGACCTTGGCTTACTAAATCATATCTGGAAATGATTCTCGAGAGAAAAGGTGTTCCCCGTCTTAGTACACCACCCCTTGTGTCTAATACAACTGTGGCTGGTAATCTAGAAACAGCAATTGTTGCACCAAAGCCAATTCGTGTTACTCCTAACCTTGTTACTGGGCTTGAGGATTTATCTCAACCATGGACTCGATCCCCAACAAAATCTAAAATGGAACCTGTTGTGGCTACATGGCATTTCATATCTCCAGATTCCTCTCAACCTGATAACTCAGCCCTAGATCCTTCATCTTTCAGGGACACCATTAGGCTTGCTCCAATGCCTGATTCATGTGACTTGGATAGGGGATTGCTTTTGGCAGTTCAAGCGATACAAGCTTTGCTGGAGAATAAAGGTGTTCCAGTTATAGTTGGAATTGGAGGTCCAAGTGGGTCTGGAAAGACTAGTTTGGCTCATAAAATGGCAAATATCATTGGTTGTGAAGTCGTTTCCCTGGAAAGCTATTATAAACAAGTAAAGGATTTTAAATATGATGACTTCAGCTCACTTGATTTATCTTTGCTATCAAAGAATATTGATGACATAAGAAAAGGTCGAAGAACGAAAGTACCTATATTTGACTTGGAAAGTGGTGCTCGGAGTGGCTTCAAGGAGCTTCAAGTTTCTGAAGATTGTGGAGTGATTATATTTGAAGGCGTCTATGCTTTGCATCCTGATATCCGAATATCACTTGACTTGTGGATTGCTGTTGTAGGAGGTGTTCATTCACATTTGATTTCACGAGTTCAAAGGGATAAGAGTAGAGTGGGATGTTTTATTTCCCAAAATGAGATCATGATGACTGTATTTCCTATGTTCCAGCAACTTATCGAACCTCATCTTGTTCATGCACATCTTAAAATTCGAAATGATTTTGACCCCGTGCTTTCTCCTGAAAGTTCATTGTTTGTATTAAAGAGTAATAAAATGGTAGCTTATCAAGATATTCTAGCAATTCTTGATCCAGCAAAATTTTGCAGTTCAGTGCAGAAATTTATTGATATTTATATAAGGCTTCCTGGTATCCCCTCTAATGGGCAGTTGACAGATAGTGATTGTATTCGAGTCAGAATATGTGAAGGCAGATTTGCATTGCTGATACGTGAGCCTATCAGAGAAGGAAACTTCATAATTCAGCCTAAAGTCGACTTTGATATCAGCATTAGCACAGTTTCTGGTCTTCTTAACCTTGGGTATCAAGCAGTTGCTTATATTGAAGCGTCTGCATTCATCTATCAGGATGGCAAGGTCACATGA 2445 0.3996 MDDEVVQRVFHEGGRDYFQQQPSTSSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKEGLVTVGIGGPSGSGKTSLAEKVASVIGCTVISMENYCDGVGEMNDLDSIDFDTLIKNLEDLTKGDDTLIPEFDYQQKRRVCYKTIKSASSGVVIVDGTYALHAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKVKCRSESSDGHSDSSSQGNEAQTDNFIEMYLRPPSASEEARINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLALGYIVVVSYKRASTTVNNGKVSISLETIDALGETFMVMRGTDRKTVGTEALRMGISGPWLTKSYLEMILERKGVPRLSTPPLVSNTTVAGNLETAIVAPKPIRVTPNLVTGLEDLSQPWTRSPTKSKMEPVVATWHFISPDSSQPDNSALDPSSFRDTIRLAPMPDSCDLDRGLLLAVQAIQALLENKGVPVIVGIGGPSGSGKTSLAHKMANIIGCEVVSLESYYKQVKDFKYDDFSSLDLSLLSKNIDDIRKGRRTKVPIFDLESGARSGFKELQVSEDCGVIIFEGVYALHPDIRISLDLWIAVVGGVHSHLISRVQRDKSRVGCFISQNEIMMTVFPMFQQLIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKMVAYQDILAILDPAKFCSSVQKFIDIYIRLPGIPSNGQLTDSDCIRVRICEGRFALLIREPIREGNFIIQPKVDFDISISTVSGLLNLGYQAVAYIEASAFIYQDGKVT. 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04447 814 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 506 687 IPR027417 -
Seca11g04447 814 Pfam Phosphoribulokinase / Uridine kinase family 519 684 IPR006083 GO:0005524|GO:0016301
Seca11g04447 814 Pfam Phosphoribulokinase / Uridine kinase family 106 223 IPR006083 GO:0005524|GO:0016301
Seca11g04447 814 CDD UMPK_like 64 226 - -
Seca11g04447 814 Gene3D - 63 243 IPR027417 -
Seca11g04447 814 Gene3D - 516 693 IPR027417 -
Seca11g04447 814 SMART AAA_5 516 660 IPR003593 GO:0016887
Seca11g04447 814 SMART AAA_5 61 211 IPR003593 GO:0016887
Seca11g04447 814 CDD UMPK_like 519 687 - -
Seca11g04447 814 PRINTS Uridine kinase signature 638 648 - -
Seca11g04447 814 PRINTS Uridine kinase signature 544 555 - -
Seca11g04447 814 PRINTS Uridine kinase signature 517 534 - -
Seca11g04447 814 PANTHER URIDINE KINASE 10 265 - -
Seca11g04447 814 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 176 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04447 Seca-Chr11 126306121 126343610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04447 512 675 PRT Gene Family AT1G55810 26.404 3.36e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04447 - - gmx:100778905 1430.62