Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04433 ATGTCTGATAATTCTTCATTCAGTAGCTTTCTCTCTGCTGCCACTCCAAATTCCACACATAATTCCCATGCACCTCCAAAAAGCACCACAATAGCCCAACCTTGTTGTATTTGCACCCATTGCAACCATCTCCTCACCTTCAATCACCATGCTGCTCATGTAACAGAGCAAGGGACAAGCAATACAGGGTCCCATATGCAACCCCAACAAAGCACAAGGTGGAGTCCAACACCAGTTCAGTTATTAGTCCTTGAGGAATTGTATAGGCAGGGCACAAAGACACCATCAGCAGAACAAATCCAGCAAATAGCTTCACAGCTACGCCAGTTTGGGAAGATTGAAGGGAAGAATGTGTTCTATTGGTTCCAAAACCACAAGGCAAGAGAGCGGCAAAAGCGTCGCCGCAGAGAGATGGAGGAAACTGCTTCTTCTAGTCAAGGTGTTTGGATTTTGGCTACAGGGTTGAAAGAGACAGGTTGTGGAGTTAAAGAGACAAAGAAGTGGGCATCCACTTCAAACTGCAGTGGACATGCAGAGGAATCTGCTGCACTGGATATATCAGAAAAGGGATCTAGTGGGTGGGCTCAATTTGAGGAGAGAGGAATACAAGTTTTGAGGAGAAGCATATCACAAGCAGAAAGGCAACAAGCTAAGTGCCAAAATATAGAAATGCCTTGTTTCACAGCTCCCATTACTATGCCACTACCACAAAGACAACAACTTTTAACCCCTCAAAATTATGATTTACAATCTGTATTCAACAGAGGAATTAGTTTCAACTATTATGATGAAGAAAATGAAGATCCAAAGACACTTGACCTTTTTCCAGTTAAGAGGGATGACCAACAAGATGGAATTTGTGTAGCTGCTGAGAGGAAATCTATGTTCTGTGGAAATGCTTCTATGGACACTGAAATCACCTCCAATCAGTTTTTTGAGTTTCTTCCTTTAAGAAACTAA 960 0.425 MSDNSSFSSFLSAATPNSTHNSHAPPKSTTIAQPCCICTHCNHLLTFNHHAAHVTEQGTSNTGSHMQPQQSTRWSPTPVQLLVLEELYRQGTKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKRRRREMEETASSSQGVWILATGLKETGCGVKETKKWASTSNCSGHAEESAALDISEKGSSGWAQFEERGIQVLRRSISQAERQQAKCQNIEMPCFTAPITMPLPQRQQLLTPQNYDLQSVFNRGISFNYYDEENEDPKTLDLFPVKRDDQQDGICVAAERKSMFCGNASMDTEITSNQFFEFLPLRN. 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04433 319 MobiDBLite consensus disorder prediction 1 26 - -
Seca11g04433 319 SMART HOX_1 69 136 IPR001356 GO:0003677
Seca11g04433 319 Pfam Homeodomain 71 131 IPR001356 GO:0003677
Seca11g04433 319 SUPERFAMILY Homeodomain-like 64 134 IPR009057 -
Seca11g04433 319 Coils Coil 195 215 - -
Seca11g04433 319 Gene3D - 55 148 - -
Seca11g04433 319 ProSiteProfiles 'Homeobox' domain profile. 67 132 IPR001356 GO:0003677
Seca11g04433 319 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 55 313 IPR044555 GO:0003700|GO:0099402
Seca11g04433 319 CDD homeodomain 72 127 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04433 Seca-Chr11 125991623 125993598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04433 71 193 Wox Gene Family AT3G18010 50.000 7.27e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca11g04433 Homeodomain 3.9e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04433 - - gmx:102666678 416.387