LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g04432	ATGGGACGCGTGAGGACAAAGACAGTGAAGAAGTCATCTCGTCAAGTAATAGAGAGATACTACTCTCGCATGACACTCGACTTCCACACCAACAAGAAGGTTCTAGAAGAGGTAGCTATTATACCTTCCAAGAGGCTCCGAAACAAGATCGCTGGCTTCTCCACTCACCTCATGAAGCGAATTCAGAAAGGTCCCGTTCGTGGCATCTCCCTCAAGCTCCAGGAAGAAGAGCGTGAACGCCGCATGGACTTCGTTCCCGAAGTTTCCGCCATTAACACCGAAAACATTCAGGTCGATAAGGAGACACTTGACATGCTCCATGCCCTTGGACTCAATGACATCCCTGGTATCACACAGGTTGATCCTGTCCCTCTCCCAGTTTTTCCTTCTAGGAGGTATTAA	402	0.4876	MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPEVSAINTENIQVDKETLDMLHALGLNDIPGITQVDPVPLPVFPSRRY.	134

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g04432	133	Pfam	Ribosomal S17	1	120	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Seca11g04432	133	FunFam	40S ribosomal protein S17	1	62	-	-
	Seca11g04432	133	Gene3D	-	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Seca11g04432	133	Hamap	30S ribosomal protein S17e [rps17e].	1	63	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Seca11g04432	133	PANTHER	40S RIBOSOMAL PROTEIN S17	1	121	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Seca11g04432	133	ProSitePatterns	Ribosomal protein S17e signature.	41	56	IPR018273	GO:0003735\|GO:0005840\|GO:0006412
	Seca11g04432	133	SUPERFAMILY	Rps17e-like	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g04432	Seca-Chr11	125982737	125983138	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g04432	1	133	Cytoplasmic Ribosomal Protein Gene Family	AT2G04390	78.723	5.44e-76	220

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g04432	K02962		-	gmx:100527036	238.81