Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04377 ATGCATCCGTTCATTATAGATGATGGTTACGTTTTTGATTCATTCGACTTGCATCATGGCTTCAACAACGGTGATGGTGTTTTAGGAAGAATACAAGAATCAATTGTGGACGACAGTTATATATTTGATTCTCTAGACTTTGGTCACATCAACAACAACACTAATGGCAGAGTTTTTGGGGTGAAGCCAGCAACTCCAGTTTCTATCGAAAATCTTGAAAGGGTCACAGTAGATGGTACAGATTCAAATTCTTCTATGCCCGAGTGTTCCATATGTCTTGGAATACTCTCAATTGGGTCGACAGCAATTCGCATGCCTAACCCATGTTGTCATGTCTTTCATGAAGGCTGCATCATTAGGTGGCTCAATACATCTAACACATGCCCTTTGTGTCGTAGGAGTATTTAG 408 0.4044 MHPFIIDDGYVFDSFDLHHGFNNGDGVLGRIQESIVDDSYIFDSLDFGHINNNTNGRVFGVKPATPVSIENLERVTVDGTDSNSSMPECSICLGILSIGSTAIRMPNPCCHVFHEGCIIRWLNTSNTCPLCRRSI. 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04377 135 SMART ringv_2 88 132 IPR011016 GO:0008270
Seca11g04377 135 ProSiteProfiles Zinc finger RING-type profile. 89 132 IPR001841 -
Seca11g04377 135 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 135 IPR013083 -
Seca11g04377 135 PANTHER SI:CH211-59O9.10 63 135 - -
Seca11g04377 135 Pfam Ring finger domain 88 132 IPR001841 -
Seca11g04377 135 SUPERFAMILY RING/U-box 70 135 - -
Seca11g04377 135 SMART ring_2 89 131 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04377 Seca-Chr11 124155224 124155655 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04377 54 132 C3H Transcription Factor Family AT1G14200 39.241 2.79e-13 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04377 - K11982 lang:109353994 117.857