Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04366 ATGAAGTTCTCGTGGCAATCAATCTTTCCTAGTTGTTATAAGGGTCTCTCTGTTTCTCTAGCAGGATCTAACTTGCATGTTTTCACACTCGCCGAGCTCAAGATTATCACACAGACCTTCTCTTCAATGGTTGTCAAACTCTTGGATTTGGATGGCACTCAGAGTCATAAAGAGTGGCTGAACCTTAGGTGCTTTTGTGTTCTGAGATTCATTTTGGTTCTGACAAGACAGACTGAAGTTGTGTTTCTGGGTCCACTAAGGCATCCACACCTTGTGAAGCTGATTGGATATTGTTGTGAAGAAGAACATAGGCTTCTGGTATATGAATACTTACCACGAGGCAGCTTAGAGAATCAACTATTTAGAAGCCAAGAATCTATTCCTATAGAAGCATCTAGCTGTTGA 405 0.4123 MKFSWQSIFPSCYKGLSVSLAGSNLHVFTLAELKIITQTFSSMVVKLLDLDGTQSHKEWLNLRCFCVLRFILVLTRQTEVVFLGPLRHPHLVKLIGYCCEEEHRLLVYEYLPRGSLENQLFRSQESIPIEASSC. 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04366 134 SUPERFAMILY Protein kinase-like (PK-like) 29 126 IPR011009 -
Seca11g04366 134 Pfam Protein tyrosine and serine/threonine kinase 78 127 IPR001245 GO:0004672|GO:0006468
Seca11g04366 134 ProSiteProfiles Protein kinase domain profile. 13 134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g04366 134 PANTHER OS01G0588500 PROTEIN-RELATED 26 122 - -
Seca11g04366 134 Gene3D Phosphorylase Kinase; domain 1 9 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04366 Seca-Chr11 123802882 123803695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04366 43 130 Glycoside Hydrolase AT3G07070 40.449 5.01e-14 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca11g04366 PK_Tyr_Ser-Thr 3.8e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04366 - - gmx:100783759 149.443