Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04362 ATGGGGGATCAGGAAGTTTTGGGTGGTGTTGGAAGAGAGGAAGAGGAAGATGAGTTTTGCAGTTGTTGTGAAGATGGGGAGGAAATTCATGAGGAAGAATTGAAGGATGACCTTGATGAATTTTCAGTGAAGTTGTTCTTCAAGGGCTTGTCAATAGCCGGGGTTGAAAATTCTGGTTCTGGGTTTTCTGGAATTGGAGTGTTCATGGAAAGAGCATGTGGCCTTCCTATTATTCGGGTGCAGAAAAGGCTTGATTTTTATGCAGAGGAGCCACTAGTTGATTATTTGGCACTCATGGATGGTTTGCTGGAAGCAGCGCAGAACAAGATCCGTCGAGTTTTTGCTTTCACAGATTCTGAGTTGTTGTACCAACAGATAACATTTGATAAAAATCTTGAGATGCCACTTTTGATTGCATTGAGAGAAAGGATTCTGGAACATGCCAATAGTTTTGAAGCTTTCACCCTGAATCTTGTTTCAAGTATTGATCTTGAGCAGCCACAACAATTAGCCAAAGTAGCAATTGGACTTGTCACTTTTCCTGTAAATGGGAAGAGTTTACTTGAGAGCTGTTCTATTTGTTGTGAGGACAAGCCATTGCCATTTATGATCACCATGAAATGTTTACACAAGTTTTGTTCACATTGCTTGAGGGCCTATGTTGATAGAAAAGTACAATCTTGTCAAGTTCCTGTAAGATGTCCTGAACCAGGATGCAAATGTTACATCTCTGCCACTGAGTGCAGGTCTTTCCTACCATTCACCTCCTTTGAATCTTTGGAGAAAGCCCTTCATGAAGCAAATTTCCTTCGCTCAGATAGAATTTACTGTCCATTTCCAAATTGTTCTGTTCTCCTTGATCCCCATAAATGTTTATCAGCCAGGGCTAGTTCATCAAGTCAGACAGACAATTCTTGTGTTGAGTGTCCTGTTTGTGAGAGGTTTATCTGTGTGGACTGTAAGGTTCCGTGGCATTCTTCCATGAGCTGTGAAGAATTTCAGAATCTTCCTGAGGAGGAGAGAGATGCTTCTGATATTACTTTGCATCGCCTTGCTCAGAATAAAAGGTGGAAGCGTTGCCAGCAATGTCGTCGGATGATTGAACTTACTCATGGTTGTTACCACATGACATGCTGGTGCGGTCACGAGTTTTGTTATTCTTGTGGTGCGGAATACAGGGATGGTCAACAGACATGTCAGTGTGCATTTTGGGATGATGACAACTCTGAAGACTCAGTGTCACACTCTCTCCAAGAATCAGAGCAGTGGGCATGGGAGACTTTCAATTCTCTCTCCATGGCCATGGATGCATACTCTGACCAGGAAAGATCACAGCTTGCACTTATACAAAGGTTTCTAGCTGGGGGTTTAGGTCTGAGTGACCATCATCCTTACCAATCTCCTCCCCCCTGTACAGACGACTATGTGGATGCAATGAAGGATCTACATCAGCTTCCATGGCTCGAGAGGTTTGTGTCTGTGATAAGTGATGAATATGAAGATTATGTTCAATGA 1515 0.4277 MGDQEVLGGVGREEEEDEFCSCCEDGEEIHEEELKDDLDEFSVKLFFKGLSIAGVENSGSGFSGIGVFMERACGLPIIRVQKRLDFYAEEPLVDYLALMDGLLEAAQNKIRRVFAFTDSELLYQQITFDKNLEMPLLIALRERILEHANSFEAFTLNLVSSIDLEQPQQLAKVAIGLVTFPVNGKSLLESCSICCEDKPLPFMITMKCLHKFCSHCLRAYVDRKVQSCQVPVRCPEPGCKCYISATECRSFLPFTSFESLEKALHEANFLRSDRIYCPFPNCSVLLDPHKCLSARASSSSQTDNSCVECPVCERFICVDCKVPWHSSMSCEEFQNLPEEERDASDITLHRLAQNKRWKRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDGQQTCQCAFWDDDNSEDSVSHSLQESEQWAWETFNSLSMAMDAYSDQERSQLALIQRFLAGGLGLSDHHPYQSPPPCTDDYVDAMKDLHQLPWLERFVSVISDEYEDYVQ. 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04362 504 Pfam Reverse transcriptase-like 56 160 IPR002156 GO:0003676|GO:0004523
Seca11g04362 504 FunFam RBR-type E3 ubiquitin transferase 328 453 - -
Seca11g04362 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 270 IPR013083 -
Seca11g04362 504 FunFam RBR-type E3 ubiquitin transferase 43 178 - -
Seca11g04362 504 Gene3D - 43 177 IPR036397 GO:0003676
Seca11g04362 504 SMART ibrneu5 258 330 IPR002867 GO:0008270
Seca11g04362 504 SMART ibrneu5 340 399 IPR002867 GO:0008270
Seca11g04362 504 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 139 419 IPR031127 GO:0004842|GO:0016567
Seca11g04362 504 Pfam IBR domain, a half RING-finger domain 350 399 IPR002867 GO:0008270
Seca11g04362 504 Pfam IBR domain, a half RING-finger domain 271 330 IPR002867 GO:0008270
Seca11g04362 504 CDD BRcat_RBR_unk 272 333 - -
Seca11g04362 504 Gene3D - 328 453 - -
Seca11g04362 504 ProSiteProfiles TRIAD supradomain profile. 187 405 IPR044066 -
Seca11g04362 504 SUPERFAMILY RING/U-box 189 267 - -
Seca11g04362 504 ProSitePatterns Zinc finger RING-type signature. 208 217 IPR017907 -
Seca11g04362 504 ProSiteProfiles Zinc finger RING-type profile. 191 235 IPR001841 -
Seca11g04362 504 FunFam RBR-type E3 ubiquitin transferase 186 271 - -
Seca11g04362 504 SUPERFAMILY RING/U-box 343 407 - -
Seca11g04362 504 CDD Rcat_RBR_unk 356 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04362 Seca-Chr11 123755861 123760144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04362 42 390 C3H Transcription Factor Family AT2G19610 26.997 4.35e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04362 - - gmx:100783040 853.973