Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04356 ATGGAAAGAGACGGTTACAGAAACAGAGGCCGAGGCCGTGGCCACAATGGTGGTGGCAGAGGAAGAGGGTTTAATCAGCCACAAAACCAACAATCTGCTAGTGATGGTGGCGGTGGCTATGGTGGCCGTGGCCGTGGCCGTGGCAGAGGATTTCCTCCTCAATCGCAACAACAATCATGGCAGCAAAAGACAAATCCAACTTCCTCTTCCTCCGGTCAAATTCACAGTGGATCTTCAAACCCTCCTCCACCACCTCCTCAAATCCAAACTCTTCCAGGTATTAAACCTTCACTAGATGTTGAGAATCTGAAAATTGATCCTTCAGTGGAGAAGCTTACACCTGTTCACAGGCCTGACCAGGGAGGAACTGTAGCAATTCGAAAGTGCAATCTTCGTGTGAATCATTTCCCTGTCATGTTCAATCCAAAGAGCATAATCATGCACTACAATGTGGATGTTAAGGCCACATTACCACCGAAAAACAATAGGCCTAAGAAGATTTCCAAGTCTGACTTGTCAATGATTAGGGAAAAGCTGTTTTCCGATCATCCCCAGCTATTACCATTGTTGAAGACTGCATATGACGGTGAAAAGAACATCTTCAGTGCAGTGCCATTGCCGGAAGAAACCTTCACTGTGGATGTCTCTAAAGGAGAAGACGAAAGAGCCGTTTCTTATACGGTTACTCTGACGCTGGTGAATAAGCTTGAGCTTTGCAAGTTGAAGGATTATCTTAGTGGCCGTGTGTTTTCCATTCCTAGGGACATTTTACAAGGGATGGACTTGGTGGTGAAGGAGAATCCTGCTAGGCGCACGGTTTCTATTGGGCGATGCTATTTTCCGATGAATCCTCCATTGGTAAAAAGGGATCTTGAGCCTGGCATTATTGCAATAGGAGGGTTTCAGCACAGTCTCAAGACCACCTCTCAGGGTTTGTCCTTATGTCTTGACTATTCTGTTCTTTCATTTAGAAAGAAATTGTCAGTGTTAGATTTCCTTCATGAGCATATTGAGGGTTTCAATTTGAATGATTTTTGGAGATTTAAGAAATATGTTGAGCAAGCACTTATTGGGTTGAAGGTGAATGTGACCCATAGGAGAACCAAGCAGAAATACACTATTGCCAAGTTAACACCTAAGACCACAAGGCATATTGATTTCTCTATTTTGGATCCTGAGGGGAAGAATCCCCCGAGGACCATGACTCTTGTGGACTACTTTAGAGATAAGTATGGAGTGCACATTCAACACAAGGATATTCCTGCCTTGGATTTTGGAGGAAACAAGACGAATTATGTGCCTATGGAGTTGTGTGTCTTGGTTGAGGGTCAGAGATTCCCTAAAGAGTATTTGGACAGAGATGCTGGTAGGGAATTGAAAAATATGTCCTTGGCTCGTCCAAGGGAGAGGGAATCTGCAATAAACATGATGATGAAGTCAAGTGATGGACCGTGCGGCGGGGGTATTCTTCAGAATTTTGGAATGAATGTCAACACTTCCATGACAAATGTGACAGGACGTGTAATTGGGCCCCCAATATTGAAGTTAGGTAATCCAAATGGCACAACCAGTAGTATGCCAGTGAATTCAGAGAAACGTGACTGGAATCTAGTTGGAAAATCGATGGTGGAAGGCAAGCCAGTTGAGTGTTGGGGTATTCTTGATTTTACCAGCAATGGTCGATACAAATTTAGAGCCGATCAATTCATTCCAAAGTTTATGGATAAGTACAGAAAATTGGGAATTGACATGAAGGAGCCAGTTTGCAAGGAATACTCTGACATGCGGATACTTGGGAATTATAATTTACTGTATGAATTGCTTGAAAAAATTCATAACAAGGTTCAAAAGAAATGTCGACAACGGCTGCAATTTCTTCTTTGTGTGATGTCCAGCAAAGATCAAGGTTACAAGAGTCTCAAGTGGATTGCTGAGACCAAGGTTGGCATAGTAACGCAATGCTGCTTATCTAGTAATTTTAATGAAGGGAAAGACCAAAATCTCACAAACCTTGCTCTCAAGATAAATGCCAAAATTGGAGGCAGTAATGTGGAGCTCATTAATAAGCTCCCACACTTTGAGGGTGAAGGTCATGTTATGTTCATAGGGGCCGATGTGAATCATCCAGCTTCCCGAGACACCAATAGTCCATCAATTGCTGCTGTGGTTGCCACTATTAACTGGCCTGCAGCAAATCGCTATGCAGCACGTGTTTGCGCCCAAGAACATAGGAAGGAGAAAATTGTGAATTTTGGAGAAATTTGCCTTGATCTTGTTACATATTATGAAAAGTTGAACAGAGTCAGGCCTGAAAAAATTGTGATCTTTCGTGATGGTGTGAGTGAGAGCCAATTTCACATGGTTCTTACAGAGGAGCTGCAAGATTTGAAGGCAGCATTTCATCGCTCAAATTACTTCCCAACCATCACTCTTATTGTAGCACAAAAGCGACATCAGACTCGATTATTTCCTGCTGGTCCGAATGAGGGGACTCCCAGTGGTAATGTGTTGCCTGGAACTGTTGTGGATACAAAGGTCATACACCCTTTTGAATTTGACTTTTACCTTTGTAGTCACTATGGAAGCTTGGGTACAAGCAAGCCAACTCACTATCATGTCTTGTGGGATGAGCACAAGTTTACTTCTGATGCTTTGCAGAAACTCATATATGATATGTGCTTTACATTTGCAAGGTGCACTAAACCTGTATCTTTAGTCCCTCCAGTATACTATGCTGACCTTGCTGCCTATAGAGGACGACTATACTATGAAGCAAGGATTTGGGTGCAGTCTCCAGATTCAGCTGCATCTTCTTCATCATCATCACCTATGGCTTCTTCATCACTTTCTTCAACATCCTCAAATTTCATTGATCCGGGTTGTTACAAGTTGCATCCTGATATGGAAAACATAATGTTCTTTGTCTGA 2928 0.4279 MERDGYRNRGRGRGHNGGGRGRGFNQPQNQQSASDGGGGYGGRGRGRGRGFPPQSQQQSWQQKTNPTSSSSGQIHSGSSNPPPPPPQIQTLPGIKPSLDVENLKIDPSVEKLTPVHRPDQGGTVAIRKCNLRVNHFPVMFNPKSIIMHYNVDVKATLPPKNNRPKKISKSDLSMIREKLFSDHPQLLPLLKTAYDGEKNIFSAVPLPEETFTVDVSKGEDERAVSYTVTLTLVNKLELCKLKDYLSGRVFSIPRDILQGMDLVVKENPARRTVSIGRCYFPMNPPLVKRDLEPGIIAIGGFQHSLKTTSQGLSLCLDYSVLSFRKKLSVLDFLHEHIEGFNLNDFWRFKKYVEQALIGLKVNVTHRRTKQKYTIAKLTPKTTRHIDFSILDPEGKNPPRTMTLVDYFRDKYGVHIQHKDIPALDFGGNKTNYVPMELCVLVEGQRFPKEYLDRDAGRELKNMSLARPRERESAINMMMKSSDGPCGGGILQNFGMNVNTSMTNVTGRVIGPPILKLGNPNGTTSSMPVNSEKRDWNLVGKSMVEGKPVECWGILDFTSNGRYKFRADQFIPKFMDKYRKLGIDMKEPVCKEYSDMRILGNYNLLYELLEKIHNKVQKKCRQRLQFLLCVMSSKDQGYKSLKWIAETKVGIVTQCCLSSNFNEGKDQNLTNLALKINAKIGGSNVELINKLPHFEGEGHVMFIGADVNHPASRDTNSPSIAAVVATINWPAANRYAARVCAQEHRKEKIVNFGEICLDLVTYYEKLNRVRPEKIVIFRDGVSESQFHMVLTEELQDLKAAFHRSNYFPTITLIVAQKRHQTRLFPAGPNEGTPSGNVLPGTVVDTKVIHPFEFDFYLCSHYGSLGTSKPTHYHVLWDEHKFTSDALQKLIYDMCFTFARCTKPVSLVPPVYYADLAAYRGRLYYEARIWVQSPDSAASSSSSSPMASSSLSSTSSNFIDPGCYKLHPDMENIMFFV. 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04356 975 CDD PAZ_argonaute_like 328 441 - -
Seca11g04356 975 SUPERFAMILY PAZ domain 323 479 IPR036085 GO:0005515
Seca11g04356 975 MobiDBLite consensus disorder prediction 934 953 - -
Seca11g04356 975 Pfam N-terminal domain of argonaute 127 263 IPR032474 -
Seca11g04356 975 CDD Piwi_ago-like 489 923 IPR045246 -
Seca11g04356 975 SMART DUF1785_2 273 326 IPR014811 -
Seca11g04356 975 SMART PAZ_2_a_3 331 465 IPR003100 GO:0005515
Seca11g04356 975 SMART Piwi_a_2 625 924 IPR003165 GO:0003676
Seca11g04356 975 MobiDBLite consensus disorder prediction 22 36 - -
Seca11g04356 975 MobiDBLite consensus disorder prediction 51 77 - -
Seca11g04356 975 Pfam Piwi domain 626 923 IPR003165 GO:0003676
Seca11g04356 975 Gene3D - 508 687 - -
Seca11g04356 975 Pfam PAZ domain 346 453 IPR003100 GO:0005515
Seca11g04356 975 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 127 926 - -
Seca11g04356 975 Gene3D paz domain 322 446 - -
Seca11g04356 975 ProSiteProfiles PAZ domain profile. 351 442 IPR003100 GO:0005515
Seca11g04356 975 ProSiteProfiles Piwi domain profile. 625 924 IPR003165 GO:0003676
Seca11g04356 975 MobiDBLite consensus disorder prediction 1 94 - -
Seca11g04356 975 Pfam Argonaute linker 1 domain 274 325 IPR014811 -
Seca11g04356 975 SUPERFAMILY Ribonuclease H-like 609 924 IPR012337 -
Seca11g04356 975 Gene3D - 695 975 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04356 Seca-Chr11 123629191 123633174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04356 45 974 Eukaryotic Initiation Factors Gene Family AT1G48410 32.414 1.75e-148 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04356 K11593 - gmx:100805250 1328.15