Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04352 ATGTCGTGTAGTTCTTCTTCTGTTGTTATGTCTCCTTATCCCAAGCATGATGTGTTCCTCAGCTTCAGAGGAGAAGACACCCGTGAGAACTTTACTAGTCATCTTTATGCAGAAGAACTACGTACGAAAAAGATTGAAACATTCATAGATTACAGACTAGACAGAGACGAAGAGATTTCACCAGCGCTATACAAAGCAATAGAAGAATCAATGATTTATGTCATCATTTTCTCCGAACACTATGCTTCTTCCACATGGTGTTTGGAAGAACTCTCAATGATACTCCAATGCAAGAAGAGATACGGAAGGGATGTGATACCAGTTTTCTATAAGGTGGATCCATCAAACGTTAGGCATCAAAGAGAAAGTTATGCTGAAGCTTTTCTAAAGCATGAACATCGATTTAAGGACAACGTGGACAAAGTGCAAGCGTGGAAGGCCGCTCTGACTGAAGCAGCTGGAGTCTCGGGCTGGGATTCACAAGGAATCAGACCAGAAAGCACACTTGTCGCAGGCATTGTGAAAGATATTTTGAGAAAACTGAATCAATCTTTCTTAAGTGATCATCAAGGAAGAATTGGAATTGACAAGCATATTGCACAAATCCAGTCCCTGTTGCACGTTCCAGCAGCTTCATTTCCAAGTGTTCAAGAAGAAATAGAAAGAAATGGGATACGCCGTACAAGAAGAAAATATTTAACAGAGCTTCTAGAAGAAGACAATTGCACATCCTCTGGATTATATTTTTCACTTGATCAAAGGCTCAAACGGGCAAAGGTTCTCCTTATTCTTGATGATGTGAACAATTCAAGTCAACTTGAAGATTTAATTGGAGGGCATAGTAACTTCGGCCAGGGCAGTAGAATCATTCTGACTACTAGGGACATGCAAGTCCTTAAGAATGTTAGAGCTGATGAAATATATGAAGTCAAGGAAATGAATTTTCAAGATTCTCTACAACTCTTCAGTTTAAATGCCTTTAAACAAAACTATCCCATAGAAACTTATAAAGGCCTGTCAGAAAAGGTATTAAATTATGCTAAAGGGATTCCACTAGCTCTCAAAATTTTAGGCTTATTGCTTTATGGCAGAACAAGGGAAGCATGGGAAAGTCAGTTGAAAAAGCTGGAAAAGCTTCCTGACCTTGAAATTTTCAATGTGTTGAAATTAAGTTATGATGGGCTTGACGACGAACAGAAGGATATATTTCTTGACATAGCTTGCTTCTATAGAGGACATTTGGAGAATATTGTAGCACAGACACTAGATTGTTGTGGTTTCTCTGCAGACATTGGACTTGATGTTCTCAAAGATAGGTGGGATGCACAAGGTGGATTTGCGTGTTCAAGTGGGATGCGCAAATTGAGTTTGCGGGTCCTAAAACACAGATTGGTTTTGCGAGTTCTTATAAACATGTGGCCTGACACACTCCATGAACGACTTTATCTTGACGGTTGTTCAAATTTGGATAATTTCCCTGAAATTTTGGAGACAATGGAAAATTTGACGATGCTAACCTTAGACGAAACAATAATAAAGGAATTGCCTTCATCCTTGCACCAATTGGTCGGGCTTGAACAATTGAGCTTGCAGAATTGCCCAAGGCTTGAGATTATTCCATCTTCTATTGGAAGTCTCAGCAAACTCTGCAAGTTAGACCTTACCCGCTGTGAATCACTTGAAACTTTTCCATGCAGCATTTTCAAATTGAGGTTGACAAAACTTGATTTGCATGGTTGCCTAATGCTAAAGACCTTCCCAGAGATCTTGCATCCTGCAGAGAGTTTTGCTCACATTATCTTAACAAGAACAAAAATTAAAGAACTGCCTTCATCATTGGACTATTTGGTTGGGCTTCGAACCTTGCGTATGGAAATGTGCAAAGATTTGGAGTCACTTCCAAATAGCATTGTTAACCTAAACCTTCTCTACAAGCTTGATTGTTCAGGCTGTTGCAAATTATACAAAATCCCAAATGACATTGGTCGATTATCATCGTTAAGGGAATTGTCGCTGCAAAAAAGTGATATTGTGAACCTTCCTGATAGTATTGCTCATCTTTCAAGCTTGAAATCACTTGATTTGAGTGATTGCAAAAGGCTTCAATGTATTCCACAGCTTTCACCATTTCTAAAACAGTTATTGGCGTTTGATTGCCCTTCCATTAGAAGAGTGATGTCAAATTCAAGGTTTAAACTTCCATCAGATTTCAAAAATGGCACCTTCAAATTTCATTTCACCAACAATCAAGAACTGGATGAAAGTGCTTATACTAATATTGTAGCCGATGCATGTCTTAGGATCACAGAAGATGCATATAGGTCTGTGTTCTATTGTTTTCCAGGGAGTGCAGTTCCTCATTGGTTCCCTTATCATTGTGAGGGACATTTTGTAATTGTGAACAAAGATTCTATAAATTGGTGCAATGATAGTAGACTCATTGGTTTCACTCTATGTGTCATTTTGGGACTTGAAGATATGGATGATATAGAAGGTAGGTCTAGTGCTTTTAGATACAGATTAATATTTGAATCTGATGGTCACACACACATTCTTCCCAACCAAGATGAACTGAGAAACTATTTCTATTGGAAGGGTGACAGATTTGTCCTCCAAGATCACATATTCTTATGGAAATATCACTTGGACTCAGCAAGCGTCGACAATAGCCTCTTTCATACCCACAACTTAACTTTTGAGATCTACAAATGTCATGATAATTGCCTTCGATGA 2733 0.386 MSCSSSSVVMSPYPKHDVFLSFRGEDTRENFTSHLYAEELRTKKIETFIDYRLDRDEEISPALYKAIEESMIYVIIFSEHYASSTWCLEELSMILQCKKRYGRDVIPVFYKVDPSNVRHQRESYAEAFLKHEHRFKDNVDKVQAWKAALTEAAGVSGWDSQGIRPESTLVAGIVKDILRKLNQSFLSDHQGRIGIDKHIAQIQSLLHVPAASFPSVQEEIERNGIRRTRRKYLTELLEEDNCTSSGLYFSLDQRLKRAKVLLILDDVNNSSQLEDLIGGHSNFGQGSRIILTTRDMQVLKNVRADEIYEVKEMNFQDSLQLFSLNAFKQNYPIETYKGLSEKVLNYAKGIPLALKILGLLLYGRTREAWESQLKKLEKLPDLEIFNVLKLSYDGLDDEQKDIFLDIACFYRGHLENIVAQTLDCCGFSADIGLDVLKDRWDAQGGFACSSGMRKLSLRVLKHRLVLRVLINMWPDTLHERLYLDGCSNLDNFPEILETMENLTMLTLDETIIKELPSSLHQLVGLEQLSLQNCPRLEIIPSSIGSLSKLCKLDLTRCESLETFPCSIFKLRLTKLDLHGCLMLKTFPEILHPAESFAHIILTRTKIKELPSSLDYLVGLRTLRMEMCKDLESLPNSIVNLNLLYKLDCSGCCKLYKIPNDIGRLSSLRELSLQKSDIVNLPDSIAHLSSLKSLDLSDCKRLQCIPQLSPFLKQLLAFDCPSIRRVMSNSRFKLPSDFKNGTFKFHFTNNQELDESAYTNIVADACLRITEDAYRSVFYCFPGSAVPHWFPYHCEGHFVIVNKDSINWCNDSRLIGFTLCVILGLEDMDDIEGRSSAFRYRLIFESDGHTHILPNQDELRNYFYWKGDRFVLQDHIFLWKYHLDSASVDNSLFHTHNLTFEIYKCHDNCLR. 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04352 910 Gene3D Ribonuclease Inhibitor 470 591 IPR032675 -
Seca11g04352 910 Pfam NB-ARC domain 240 378 IPR002182 GO:0043531
Seca11g04352 910 ProSiteProfiles TIR domain profile. 14 181 IPR000157 GO:0007165
Seca11g04352 910 SMART till_3 15 155 IPR000157 GO:0007165
Seca11g04352 910 SUPERFAMILY L domain-like 446 720 - -
Seca11g04352 910 Pfam TIR domain 15 187 IPR000157 GO:0007165
Seca11g04352 910 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 406 IPR027417 -
Seca11g04352 910 Gene3D - 12 188 IPR035897 -
Seca11g04352 910 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 635 IPR044974 GO:0006952
Seca11g04352 910 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 183 - -
Seca11g04352 910 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 158 IPR035897 -
Seca11g04352 910 Gene3D - 313 396 IPR042197 -
Seca11g04352 910 Gene3D Ribonuclease Inhibitor 593 755 IPR032675 -
Seca11g04352 910 Pfam C-JID domain 780 885 IPR045344 -
Seca11g04352 910 PRINTS Disease resistance protein signature 347 361 - -
Seca11g04352 910 PRINTS Disease resistance protein signature 254 268 - -
Seca11g04352 910 PRINTS Disease resistance protein signature 685 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04352 Seca-Chr11 123573329 123579916 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04352 8 700 WRKY Transcription Factor Family AT4G12020 26.548 5.79e-51 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04352 - - lja:Lj0g3v0310499.1 633.639