Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04334 ATGAAAGAGGGTGGTAGGAAACAGGGTGCACCCTCACCCTGTGCTGCATGCAAGCTCCTCCGCAGAAGGTGTGCTCAAGATTGTGTTTTTGCCCCTTATTTCCCAGCGGATGAGCCCCAGAAGTTTGCAAATGTGCACAAAGTGTTTGGTGCTAGTAATGTCAACAAGATGCTTCAGGACTTACCAGAGCATCAAAGAGGGGATGCAGTGAGCAGCATGGTGTATGAGGCAAATGCAAGGGTGAGAGACCCTGTGTATGGGTGTGTAGGGGCCATTTCATCCCTTCAGCAACAGATTGATGTGCTACAGACCCAATTGGCAGTGGCCCAAGCTGAGGCAGTGCACCTTAGGGTGCGCCAAACTGCATCACTCTGGAACCAAGGTCATAGCCCAACCTATAGTGGCTCTCCATCATCCAAGATCATTGAATCACAAGCCAAGCCTATTTTTGACATGGACATGGTGGTGGACCACACTGGCTATGGTGATTCAATGTGGTAA 501 0.501 MKEGGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQTASLWNQGHSPTYSGSPSSKIIESQAKPIFDMDMVVDHTGYGDSMW. 167
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04334 166 Coils Coil 92 112 - -
Seca11g04334 166 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Seca11g04334 166 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Seca11g04334 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 123 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca11g04334 Seca-Chr11 122997201 123003283 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04334 1 166 AS2 family AT1G31320 70.588 1.77e-75 221
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca11g04334 LOB 6e-44 No_clan