Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04332 ATGGAGCTAGAGGTAAAGGTGGTGGGGGGAATAGATAACTGTTTTGTATCTCTTCCCCTACCTCTAATTCAGACTCTACAGTCCACACGATCAGTTCCGCTTCCTGAAATTCTCGCTCTCGAGCTTCGTTCTTCCACTCAACCCCCTCACATCTGGTTTGTTGCTTGGTCTGGTGCCACTTCTGCTTCTTCCGCCATAGAGGTTTCTCAACAATTTGCTGAATGCGTTTCGTTGCCGAATCATGCTGCAGTTCAAGTGAGAGTTGCTTCTAACGTGCCACATGCTTCTCTGGTCACGATAGAGCCACACACGGAAGATGACTGGGAAATATTGGAACTCAACTCAGACCAAGCTGAGGCTAAAATCCTCAACCAGGTCAGGATTGTCCATGAAGGGATGAAATTTCCTTTGTGGTTGCATGGTCACATTGTCATAACATTCCACGTGGCTTCTGTTTTTCCGAAGAATGCGGTGGTGCAACTCATGCCAGGGACTGAAGTTGCTGTTGCTCCAAAAAGACGCAAAAGAATTTCAGATTCAGCAGGAGATTCACATCTAGACTCCTGTAATAAAGGGCATACTGCAAAGATGCTGCTTCGTCTACAAGATCCAGATGGGTTATGTCATACTAGTACTAATGTTAAAGGTGTTGAGCTTCATGTAGGGCTTACTTCTGTTGCTTTTGTTCATCCAGAAACAGCCAAGCACTTCTCATTTAACATTCTTCAGTTGGTTTCCATAGTGCCAAGACTATCAAAGGCAAATGTTAATATTTCCAGAACCAATATTATGAAAGGCAAAGGTGGTTCAACTGTTAATGAAGTTGAGAAAGGAAATACTGACAAGAAAGAACATCGACAAGCAATTGTTCATCTGTTGTTTTCAGAATCTGTAGCTGAAGGACATGTAATGGTAGCTAAGTCTCTTCGCCTTTATTTGAGAGCTAGCCTGCATTCATGGGTTTATTTGAAGGCATGTGATATTATTTTGGAAAGAAGTATTCCTTCCATCTCTCTTTTTCCTTGCCAATTCAAACTGTTAAGGCAGGAGAATGCTGTTGAGAAAGATGGTCAAGAAGTTTTCCCGGGCCACAAGAATCACATTCATGAAAAATTGCATGCAGAAGCTACTTCAGGTGTCTTTGTGGATACTACAGATTGGTCAATCCACAATGAGGTTGTTGCAGCTCTTTCTGATGATCCCAATTACAAAGCAGAGGAAGAGACTGCAAATCAGTCTCAGAATCAAAAGGGATTACAGAGTCTTGCACAACTATGGTATATTGCACAGCTTGAGGCAATCACTTCCATTATGGGTTTGGAGGTTAATTCATTGGTTATGGGTAATATAACCTTGCTTCATTTTGAATTAAACTGTTACAAGCTTGGGAGAGATGGGAAGGTTCAACTGACTTATAATTCTTCAGAGAACAGTGGCAAGGCAGCTGAAATGTTATATTTATTGACCTTTGGTGAGGAATATCTGCATCATGGGAACCTTAATGCATACAAAGTTTCCCTTGGTGGAAGACTCAATAGTATCAATGTTGGGGATCTGAAGCTTTTTGAAAGGGTGAAATTGGGTGATCCTGTTTCTATTCATTCTATAGAAGAGAGAGCCTCTGAAGACCACATTAGTTCAAATGTATCCTTCCTTGGCTGGATAGAGAAAACTGCATCTGATGTTATCAATAGGGTGTTGGTATTGTTATCTTCAGCATCTGGTTTGTGGTTTGGCTCATACAACCTGCCACTTCCTGGACATGTTCTAATATATGGACCTCCAGGCTCTGGAAAAACTATATTAGCAAGGACCGTGGCAAAATCCCTTGAGAATCGTGAAGACATCTTAGCACACATAATTTTTGTTTCCTGCTCAAAACTTGCTTTGGAGAAGGTCCCAATTATTCGCCAAGAACTTGCAAATCATATAACTGAAGCTTTAAACCATGCACCTTCCATTGTCATCTTTGATGATCTTGATAGCATAATTTCTACCTCTGACTCCGAAGGATCTCAGGCTTCAATATCTGTTGCTGGACTTGCTGATTTTCTTGTTGACATCATGGATGAATATGGGGAGAAGAGGCGAAAATCATGTGGATTTGGACCAATAGCCTTCATAGCTTCCATACAATCCCTAGAGAACATTCCACAATCTTTGAGCTCTTCAGGACGGTTTGACTTTCACATAAAGCTGCCTGCTCCTGCAGCTTCGGAGCGCAGGGCTATGTTGAAGCATGAAATACAAAGGCGTCACTTGCAATGTGATGATGAGATCCTGCTTGATGTGGCTGTAAAATGTGATGGTTATGATGGTTATGATCTGGAAATATTAGTTGACAGAACTGTCCATGCTGCTGTTCGCCGTTTTCTACCATTTAATGCCACCATTTATGAGCACGAGAATCCTGCTTTATTAAGGGAGGATTTCTCTGAGGCAATGCATGATTTTCTTCCAGTTGCAATGCGTGACATCACAAAATCTGCTTCTGATGATGGCCGTTCTGGATGGGACGATGTGGGTGGTCTTGTTGATATTCGAAATGCTATTAAAGAGATGATAGAGTTGCCATCAAAGTTTCCAAAAACTTTTGCTCAAGCACCTTTGAGGCTGCGGTCAAATGTCCTTTTATATGGCCCTCCTGGTTGTGGCAAAACTCATATAGTTGGTGCTGCTGCTGCTGCTTCTTCACTTCGTTTCATATCAGTGAAAGGGCCAGAGCTGTTAAACAAGTACATTGGTGCTTCTGAACAAGCTGTTAGGGATATATTCTCTAAAGCAGCTGCAGCAGCTCCATGTCTACTGTTTTTTGATGAATTTGATTCTATTGCTCCCAAGAGAGGGCATGACAATACTGGAGTAACTGATCGTGTTGTTAATCAATTTTTGACCGAGTTAGATGGTGTTGAGGTTTTAACTGGTGTATTTGTGTTTGCCGCAACCAGTAGACCGGATTTACTTGATGCAGCGCTGTTGAGACCGGGTAGGTTAGATCGTCTTCTATTTTGTGACTTTCCATCTTCGCATGAGAGATTGGAAATTCTTACTGTGCTTTCTAGAAAGTTGCCAATGGCCAATGATATTGATTTGGCTACAGTAGCTAATATGACTGAGGGATTCAGTGGGGCTGATCTCCAAGCTCTTCTCTCAGATGCACAGCTTGCAGCAGTTCATGATATTCTGGACAATGTGGACGCCTCTCAGCCAGAGAAAACCCCAGTTATCACTGATGCTCTTCTTAAGTTCACTGCATCCAAGGCTAGACCATCTGTTTCAGAAGAAGAGAAAGGAAGACTCTACAGTATTTATCGCCAGTTCCTGGATTCAAAGAGATCTGTTGCTGCCCAGGTTTTTCCCTCTCCCTCTCTCTCCCCCCCCCCCCCCAGTGTCTGTGTTTCTGTTAA 3407 0.4241 MELEVKVVGGIDNCFVSLPLPLIQTLQSTRSVPLPEILALELRSSTQPPHIWFVAWSGATSASSAIEVSQQFAECVSLPNHAAVQVRVASNVPHASLVTIEPHTEDDWEILELNSDQAEAKILNQVRIVHEGMKFPLWLHGHIVITFHVASVFPKNAVVQLMPGTEVAVAPKRRKRISDSAGDSHLDSCNKGHTAKMLLRLQDPDGLCHTSTNVKGVELHVGLTSVAFVHPETAKHFSFNILQLVSIVPRLSKANVNISRTNIMKGKGGSTVNEVEKGNTDKKEHRQAIVHLLFSESVAEGHVMVAKSLRLYLRASLHSWVYLKACDIILERSIPSISLFPCQFKLLRQENAVEKDGQEVFPGHKNHIHEKLHAEATSGVFVDTTDWSIHNEVVAALSDDPNYKAEEETANQSQNQKGLQSLAQLWYIAQLEAITSIMGLEVNSLVMGNITLLHFELNCYKLGRDGKVQLTYNSSENSGKAAEMLYLLTFGEEYLHHGNLNAYKVSLGGRLNSINVGDLKLFERVKLGDPVSIHSIEERASEDHISSNVSFLGWIEKTASDVINRVLVLLSSASGLWFGSYNLPLPGHVLIYGPPGSGKTILARTVAKSLENREDILAHIIFVSCSKLALEKVPIIRQELANHITEALNHAPSIVIFDDLDSIISTSDSEGSQASISVAGLADFLVDIMDEYGEKRRKSCGFGPIAFIASIQSLENIPQSLSSSGRFDFHIKLPAPAASERRAMLKHEIQRRHLQCDDEILLDVAVKCDGYDGYDLEILVDRTVHAAVRRFLPFNATIYEHENPALLREDFSEAMHDFLPVAMRDITKSASDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSSHERLEILTVLSRKLPMANDIDLATVANMTEGFSGADLQALLSDAQLAAVHDILDNVDASQPEKTPVITDALLKFTASKARPSVSEEEKGRLYSIYRQFLDSKRSVAAQVFPSPSLSPPPPSVCVSV 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04332 1135 Gene3D - 536 736 IPR027417 -
Seca11g04332 1135 ProSitePatterns AAA-protein family signature. 976 994 IPR003960 GO:0005524|GO:0016887
Seca11g04332 1135 FunFam Peroxisome biogenesis protein 1 737 817 - -
Seca11g04332 1135 Gene3D - 837 1096 IPR027417 -
Seca11g04332 1135 Pfam ATPase family associated with various cellular activities (AAA) 589 734 IPR003959 GO:0005524|GO:0016887
Seca11g04332 1135 Pfam ATPase family associated with various cellular activities (AAA) 876 1003 IPR003959 GO:0005524|GO:0016887
Seca11g04332 1135 Gene3D - 737 817 - -
Seca11g04332 1135 SUPERFAMILY Cdc48 domain 2-like 93 171 IPR029067 -
Seca11g04332 1135 FunFam PeRoXisome assembly factor 1007 1083 - -
Seca11g04332 1135 SUPERFAMILY ADC-like 10 90 IPR009010 -
Seca11g04332 1135 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 838 1099 IPR027417 -
Seca11g04332 1135 CDD RecA-like_PEX1_r2 847 1004 - -
Seca11g04332 1135 Gene3D - 93 172 - -
Seca11g04332 1135 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 567 816 IPR027417 -
Seca11g04332 1135 Gene3D - 1007 1086 - -
Seca11g04332 1135 FunFam Nuclear valosin-containing protein-like 834 1012 - -
Seca11g04332 1135 FunFam Peroxisome biogenesis protein 1 542 736 - -
Seca11g04332 1135 Pfam AAA+ lid domain 1028 1067 IPR041569 -
Seca11g04332 1135 PANTHER AAA-FAMILY ATPASE 221 1102 - -
Seca11g04332 1135 SMART AAA_5 872 1008 IPR003593 GO:0016887
Seca11g04332 1135 SMART AAA_5 585 737 IPR003593 GO:0016887
Seca11g04332 1135 Pfam Peroxisome biogenesis factor 1, N-terminal 98 171 IPR015342 GO:0005524|GO:0005777|GO:0007031
Seca11g04332 1135 FunFam Peroxisome biogenesis factor 1 93 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04332 Seca-Chr11 122909985 122941980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04332 586 806 Calmodulin-binding Proteins AT3G56690 29.279 6.21e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04332 K13338 - gmx:100803882 1935.61