Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04327 ATGCTACTGGAGGTAGCTTTTGGTAGTAGTAGAGTTGCAGTAGAAAATCGAGCCACATTACCACCACTGCCAATTCCTACAAAAAATTTGCAAAGGGGTGGAGTTAAGCCACTTTCAGGAAAACCATACTATCATGTGGTTCTTTCAAAATCACATGTTAGTCCTCCTTATGTAATGGGGCCGTCTGCCAAGTTATACTCAAAACTTCCTTCTCAAGTGGTCCCTACTGTTCTCAAATATGGAGGCAAGAGCTGGAAAATGACTTATAATGGACAAAGCACAGATCGCAAGAGGTTTACTTGCAAAGGCTGGGGAAAATTTGTTGAAGATAATTGTTTGAAGGTTGGAGACGCATGCATCTTTGAGCTCATGGAAAAGAGTACTGAAGAGAAAGTCATCTTCCAAGTTCAAATTCTTAGAGGTGACCTCCCATTCAAATTTCATGAAATTGGTGAGAGTGCAGAAAACCCAATTGTCTTTTGA 483 0.4058 MLLEVAFGSSRVAVENRATLPPLPIPTKNLQRGGVKPLSGKPYYHVVLSKSHVSPPYVMGPSAKLYSKLPSQVVPTVLKYGGKSWKMTYNGQSTDRKRFTCKGWGKFVEDNCLKVGDACIFELMEKSTEEKVIFQVQILRGDLPFKFHEIGESAENPIVF. 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04327 160 CDD B3_DNA 42 140 IPR003340 GO:0003677
Seca11g04327 160 SMART B3_2 44 137 IPR003340 GO:0003677
Seca11g04327 160 Gene3D - 34 142 IPR015300 -
Seca11g04327 160 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 41 148 IPR044837 -
Seca11g04327 160 Pfam B3 DNA binding domain 74 134 IPR003340 GO:0003677
Seca11g04327 160 SUPERFAMILY DNA-binding pseudobarrel domain 40 131 IPR015300 -
Seca11g04327 160 ProSiteProfiles B3 DNA-binding domain profile. 82 142 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04327 Seca-Chr11 122846294 122847553 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca11g04327 B3 6.7e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04327 - - tpra:123884363 172.555