Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04317 ATGTTGGGTGGGCTATATGGAGACTTACCTCCACCCTCTTCTTCCGAAGAAGAGAAACCAACCACCAATGTATGGTCCAGCAGCACCAAAATGGCCCCCGCCACCCTCCGTAAACCGGCCTCAATTTTCCAACCTCCACAGACCGTTCTGAGATCCCAGAACAAACCCAAAATTGTCAATTCTTCTTCGGTTCCCAAAACAGTGGTGTCGCCGGCACCAGTACCGGCTCCGGCAACGGACGACGTTGTGCAAACAGCTCTGGTGGGTGTTCAGTCGACGGTGATTGAGGAGTACGACCCGGCGAGGCCGAACGACTATGAGGAGTACCGGAGGGAGAAGAAGAGGAAGGCCAGGGAGGCGGAAATGATGAGGGAGCTGGAGAGGCGGCGCCAGGAGGAGGAAGAGGAGGAGCGAGAGAGGGAGAGGGAGAGAGAAAGGGAAAGAGAGAGAGATAGGGATTACGGGGATTCGAGGTTGAATATTTCCGGCGAAGAGGCGTGGAGGAGGCGGGCGGCAATGAGTGGCGGTGGTGGAGGTGGTGGCGGCGGGACGGTGCCGAGGTCTCCGTCCCCGCCTGGGAATGCGGATGGTTTTACCATTGGGAAGTCAGAGACAGGAGGGTTGGGGGTTGGTGCGGGTGGGCAGATGACTGCGGCTCAGAGAATGATGGCGAAGATGGGGTGGAAGGAAGGGCAAGGGCTTGGGAAGCAGGAGCAAGGGATTACTACTCCTTTGATGGCCAAGAAAACGGATAGACGAGCTGGGGTTATTGTCAATGCTAGTGACAATAGCAAGAAAGTGAAGAGTGTCAACTTCCATGGAGTGCCTACAAAGGTGCTGCTGCTTAGAAACATGGTGGGGCCTGGTGAGGTAGATGATGAGCTGGAAGAGGAGGTAGGATCAGAATGTGCCAAGTATGGGACAGTAACTCGAGTTCTGATATTTGAGATCACAGAGCCAAATTTCCCCGCTGATGAAGCAGTAAGAATCTTTGTGCAGTTCGAGAGACCCGAAGAAACAACTAAAGCACTTATTGACCTTGATGGTCGTTACTTTGGGGGTAGAATAGTGCGTGCCTCATTTTATGATGAGGATAAGTTTAGCAAGAATGAGTTGGCTCCATTGCCTGGAGAAATTCCTGGCTTCTAA 1149 0.5335 MLGGLYGDLPPPSSSEEEKPTTNVWSSSTKMAPATLRKPASIFQPPQTVLRSQNKPKIVNSSSVPKTVVSPAPVPAPATDDVVQTALVGVQSTVIEEYDPARPNDYEEYRREKKRKAREAEMMRELERRRQEEEEEERERERERERERERDRDYGDSRLNISGEEAWRRRAAMSGGGGGGGGGTVPRSPSPPGNADGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDNSKKVKSVNFHGVPTKVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPADEAVRIFVQFERPEETTKALIDLDGRYFGGRIVRASFYDEDKFSKNELAPLPGEIPGF. 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04317 382 MobiDBLite consensus disorder prediction 96 210 - -
Seca11g04317 382 SUPERFAMILY RNA-binding domain, RBD 281 367 IPR035979 GO:0003676
Seca11g04317 382 MobiDBLite consensus disorder prediction 100 165 - -
Seca11g04317 382 PIRSF SPF45 3 379 IPR040052 GO:0045292
Seca11g04317 382 PANTHER SPLICING FACTOR 45 SPF45 1 374 IPR040052 GO:0045292
Seca11g04317 382 SMART G-patch_5 213 259 IPR000467 GO:0003676
Seca11g04317 382 Pfam G-patch domain 218 257 IPR000467 GO:0003676
Seca11g04317 382 CDD RRM_UHM_SPF45 276 372 IPR034653 -
Seca11g04317 382 ProSiteProfiles G-patch domain profile. 215 261 IPR000467 GO:0003676
Seca11g04317 382 Coils Coil 106 152 - -
Seca11g04317 382 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 278 364 IPR000504 GO:0003723
Seca11g04317 382 MobiDBLite consensus disorder prediction 15 34 - -
Seca11g04317 382 MobiDBLite consensus disorder prediction 1 80 - -
Seca11g04317 382 MobiDBLite consensus disorder prediction 41 68 - -
Seca11g04317 382 SMART rrm2_1 279 360 IPR003954 GO:0003676
Seca11g04317 382 Gene3D - 274 372 IPR012677 -
Seca11g04317 382 FunFam Putative splicing factor 45 277 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04317 Seca-Chr11 122688457 122697951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04317 221 256 C2H2 Transcription Factor Family AT5G26610 61.111 1.09e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04317 K12840 - gmx:100800998 489.574