Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04271 ATGGGTGATGATAGCGTTGATTTAACTACACCAACAAAAGGCTTAAATGATCTAGTTGATATGTTGGAGGAATGGGTTCCAGAGTGTGATGAAGAAATCAAACCTGTAGTTGGCAGAGTCTTTGATACTTTAGAACAAGGAGGGGACTTTTATCAAAGGTATGCACATACTGATGGTTTTAGTGTATGCAAAGAAACTGAAACAAAATATAAAAATGGAGAAACAAAGTGGAAATATTTTCTTTGCTATAAAGAAGGCTTCAAATTAGAGAAAAAAGAGAGTGTAACTGAGTTTCTTGTTGATGATAAAAAGTTATCTAAAACCAGACGAAGAAAACTAACAAGGGAAGGGTGTAATGCAAGGATTGTTTTTAAGAGGACACAAGAAGGAAAATATGAAGTGGTGAGATTTCATGAAGGTCATACACATTCATTAGCTACACCTAAAAAGAAACAGTTCTTAAGATCAGAAGGAGCATAA 480 0.3438 MGDDSVDLTTPTKGLNDLVDMLEEWVPECDEEIKPVVGRVFDTLEQGGDFYQRYAHTDGFSVCKETETKYKNGETKWKYFLCYKEGFKLEKKESVTEFLVDDKKLSKTRRRKLTREGCNARIVFKRTQEGKYEVVRFHEGHTHSLATPKKKQFLRSEGA. 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04271 159 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 27 156 - -
Seca11g04271 159 Pfam FAR1 DNA-binding domain 49 146 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04271 Seca-Chr11 121463666 121464145 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca11g04271 FAR1 2.7e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04271 - - tpra:123895784 184.882