Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04269 ATGGAGGAGAGGAATTATGTGTGCAGGTATTGCTACAAGAGGTTTCCTTGTGGGAAGTCTCTGGGTGGTCACATCAGGACCCATATGAGTGAAGAAAGAAGTAATATTGATAGTGACATGCTCAAGTTGGATGGTGGTAGAAGGAAGAAGAGAGATTTATGGTCTGAAGCTGATGCTGGTGCTGGTGGGAACTCCATTTATGGCCTTAGAGAGAACCCCAAGAAAACAATGAGGTTTGTGCATTCCGATGCCACTTTGGAACAGGTGGAGAATTTCTGCAAAGAATGTGGGAAAGGCTTTCCTTCATTGAAAGCTCTCTGTGGTCACATGGCTTGTCACTCAGAGAAAGAGAAGGAGAAATTGGTTATGGATAGTCAATCTGATACTGAGACTTGTGCTCCAACACATCCAAGGAGATCCAAGAGAATGAGGTTCAAGTCTCTTACCCTTTCTAATCACTCCTCTTCTGTTGTTCTTCCTTTGGGGAATGGTTCTTCACCTGTGTCTGAGGTTGAGCAGGAACAAGAAGAGGTGGCTAGGTGCTTGATGCTGTTATCCAAAGATTCTAGTTTCAAGGGTCGTTTTGCTTCTGAATCCTCTGATAACAACTCGGTTGTTCTTGAGGCAAAATCATCCTCTCTTGATACAAAGGTTGCTATGAGTTATGGTAACAACTTTGTCTCTAATGGTTTTGAATTTGCTGAGAAGAAGCTGCTGCTCAAGGGCACCAAGTTAAAGTCTGTTGTTGGGGTTGGTGTTTCTGAGAATTCAGATTCTAGATGTTTCAGATATGGTCCCAAAACCAAAAGGGTAGACTCAGATGTTTCACATGATGAGTTTAAGAGGCCAAAGATTGGAGATAAGTCAGGTTTTGAGGATTGCAGTTTTGAGTTGAACAGAGGAAGAAGCAAATGCAGTGTTACTTTATTGAAGAAATTAGTCATTAAGGATTTTGATTGTGATAGAACAGATGGAAAGAGAGCCAACTATGATTCTCTTAGTCACAAGAAGAGAACTAATGGTTCTACCAATGATGAAATCTATGAGAATGGTAGGAAAGGTTGGAAGTATGAGAAGGACAATGACTCTTATGATTCAACATATGAGAGTGATGAAAACAGTTCAGAGAGTGATTCATATCCTGCTCCCAGGTATCTTAATAGTAAGAGTCTCAATGGGAAAAAGTCCAGCAAGACCAAGAAGAAGAAGTTGAAGTCAAAGAAAAGCAGGGAACATGAGTGCCCAATCTGCTACAAAATTTTCAAGTCAGGCCAAGCCTTAGGTGGTCATAAAAGATCCCACTTTATTGGAGGTTCTGAAGAAAACACTCTTGTGATCAAACAAAGTGCTCCTGTTGTTCCTTGCCTTATTGATCTCAATTTACCTGCTCCTGTTGATGATTAA 1404 0.4103 MEERNYVCRYCYKRFPCGKSLGGHIRTHMSEERSNIDSDMLKLDGGRRKKRDLWSEADAGAGGNSIYGLRENPKKTMRFVHSDATLEQVENFCKECGKGFPSLKALCGHMACHSEKEKEKLVMDSQSDTETCAPTHPRRSKRMRFKSLTLSNHSSSVVLPLGNGSSPVSEVEQEQEEVARCLMLLSKDSSFKGRFASESSDNNSVVLEAKSSSLDTKVAMSYGNNFVSNGFEFAEKKLLLKGTKLKSVVGVGVSENSDSRCFRYGPKTKRVDSDVSHDEFKRPKIGDKSGFEDCSFELNRGRSKCSVTLLKKLVIKDFDCDRTDGKRANYDSLSHKKRTNGSTNDEIYENGRKGWKYEKDNDSYDSTYESDENSSESDSYPAPRYLNSKSLNGKKSSKTKKKKLKSKKSREHECPICYKIFKSGQALGGHKRSHFIGGSEENTLVIKQSAPVVPCLIDLNLPAPVDD. 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04269 467 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Seca11g04269 467 MobiDBLite consensus disorder prediction 373 393 - -
Seca11g04269 467 Pfam C2H2-type zinc finger 6 31 - -
Seca11g04269 467 Pfam C2H2-type zinc finger 93 115 - -
Seca11g04269 467 Pfam C2H2-type zinc finger 412 434 - -
Seca11g04269 467 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 466 - -
Seca11g04269 467 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Seca11g04269 467 SUPERFAMILY beta-beta-alpha zinc fingers 2 32 IPR036236 -
Seca11g04269 467 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Seca11g04269 467 SUPERFAMILY beta-beta-alpha zinc fingers 92 434 IPR036236 -
Seca11g04269 467 SMART c2h2final6 91 113 IPR013087 -
Seca11g04269 467 SMART c2h2final6 412 434 IPR013087 -
Seca11g04269 467 SMART c2h2final6 6 28 IPR013087 -
Seca11g04269 467 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Seca11g04269 467 ProSiteProfiles Zinc finger C2H2 type domain profile. 412 434 IPR013087 -
Seca11g04269 467 MobiDBLite consensus disorder prediction 359 408 - -
Seca11g04269 467 ProSitePatterns Zinc finger C2H2 type domain signature. 414 434 IPR013087 -
Seca11g04269 467 MobiDBLite consensus disorder prediction 394 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04269 Seca-Chr11 121422810 121424285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04269 1 467 C2H2 Transcription Factor Family AT1G26610 44.130 2.21e-95 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca11g04269 zf-C2H2_6 4.6e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04269 - - vun:114177115 517.309