Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04253 ATGAGAGTGTTTCTTCGCTTGGTGAAGAGCCTGAATCCAAAGCTTGTAACGGTTGTGGAGCAAGATGTAAACACTAACACCACCCCCTTCTTACAGAGATTTGTTGAAGCCTACAATTACTACTCTGCTGTGTTTGAGTCGCTTGATATTACTCTTCCTAGAGAGAGTCAGGACAGGATGAATGTTGAAAGGCAATGCTTAGCAAGGGACATTGTCAATGTTGTTGCATGTGAAGGTGAGGATAGGATAGAACGGTATGAAGTTGCGGGAAAATGGAGAGCAATGATGACAATGGCTGGCTTCACTCCATCCCCAATGAGCACAAATGTGGCTGATGAAATCCGAAAACTCATTAAGTTGTACTGTGACAGGTACAAGATAGGGTGCACTTCATTTTGGTTGGGAAGACAAAAACTTATTGTTGCTTCAGCATGGAGGTGA 441 0.4331 MRVFLRLVKSLNPKLVTVVEQDVNTNTTPFLQRFVEAYNYYSAVFESLDITLPRESQDRMNVERQCLARDIVNVVACEGEDRIERYEVAGKWRAMMTMAGFTPSPMSTNVADEIRKLIKLYCDRYKIGCTSFWLGRQKLIVASAWR. 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04253 146 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 4 141 IPR005202 -
Seca11g04253 146 Pfam GRAS domain family 3 146 IPR005202 -
Seca11g04253 146 ProSiteProfiles GRAS family profile. 1 146 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04253 Seca-Chr11 121030462 121030902 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04253 4 146 GRAS Transcription Factor Family AT1G21450 71.622 3.90e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca11g04253 GRAS 1.1e-47 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04253 - - lja:Lj0g3v0158379.1 249.21