Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04241 ATGGTTGGGGGTGGAAATGGAGAGGGAGCTCGAGCACCACCGTGGACAGTGGCGCGTCCCAACATCAGCATCCCGCCACGCGCCTCGATGGAGAGTGGTGGGGCCCCAGTGGGGTTGAGTCCCGGTCCCATGACTCTGCTTTCGAACTTCTTTGGTGACAACGATGAGTGCAAGTCCTTCTCGGAGCTTCTCGCCGGCGCTATGGTGGAGCACGGCGAAGGTGCTCCCTCTGGCTTCTCTCCCATGGCCATGTTCACCGTTCCACCAGGGTTGAGCCCCGCTGGCTTCCTCCACTCACCTCCACCTCAGGGGCACTTTGGAATGACACATCAGCAAGCTATAGCACAGGTTCCTGCAGCTACTTCCAGTACTGCACAACAGCTGATACCACCCTCATCCCTTGATTATCCTCACTCTGAACAAAGATTGCAGTCTTCTGCTGTGAATGTTGATAAGCCCAATGATGATGGCTACAATTGGAGGAAGTATGGGCAGAAACAGGTGAAAGGTTGTGAGTTCCCTAGAAGTTATTATAAGTGCACTCATCCAAGTTGTCCTGTTAAGAAAAAGGTTGAACGTTCTCTTGATGGTCATGTAACTGCAATTATTTATAAAGGAGAGCACAATCATCAATGTCCTCATCCCAGCAAGCTCACAAAAGACAACCAAACTTCAAATCAAAATTCAAACATGCCAGGGAATCTTGATTCAATAAATTCTCACCCAATGTCTAAGATTGATCCAGAATCTAGTCAGGCAACAGTTGAACATGTGTCAGGAACAAGTGATGGTGAGGAAGTAGGTGATAATGAAAATGAAGTACATGAAAAAAATGATGAGCCTGATCCCAAGAGAAGAAACACAGAAGTCAGGGTCCTGGATCATGCCTCATCACATAGGACTGTCTCAGAGCCTAGAATTATTGTGCAAACAACAAGTGAAGTGGATCTCTTAGAGGATGGATATAGATGGCGCAAATATGGGCAGAAAGTTGTCAAAGGCAACCCATATCCAAGGAGCTATTACAAATGCACAACCCCAGGTTGCAATGTTAGGAAGCATGTTGAGAGGGTTTCAACAGATCCTAAAGCTGTCATGACAACATATGAAGGAAAACATAACCATGAAGTACCAGCTGCTAAGACTAATAGCCACACTCTTGCCAACAGTAGTGCATCACAGCTAAAATCACAAAATGCCATACCTGAGAAGCATAGTTTCAACAGCAGGGGTGTTGTGGACAATGAGCAGCAGCCTGTAGCAGTAGCACGTCTAAGGTTGAAGGAAGAGCAGATAACATAG 1302 0.4693 MVGGGNGEGARAPPWTVARPNISIPPRASMESGGAPVGLSPGPMTLLSNFFGDNDECKSFSELLAGAMVEHGEGAPSGFSPMAMFTVPPGLSPAGFLHSPPPQGHFGMTHQQAIAQVPAATSSTAQQLIPPSSLDYPHSEQRLQSSAVNVDKPNDDGYNWRKYGQKQVKGCEFPRSYYKCTHPSCPVKKKVERSLDGHVTAIIYKGEHNHQCPHPSKLTKDNQTSNQNSNMPGNLDSINSHPMSKIDPESSQATVEHVSGTSDGEEVGDNENEVHEKNDEPDPKRRNTEVRVLDHASSHRTVSEPRIIVQTTSEVDLLEDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERVSTDPKAVMTTYEGKHNHEVPAAKTNSHTLANSSASQLKSQNAIPEKHSFNSRGVVDNEQQPVAVARLRLKEEQIT. 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04241 433 MobiDBLite consensus disorder prediction 1 37 - -
Seca11g04241 433 FunFam WRKY transcription factor 141 214 - -
Seca11g04241 433 SMART WRKY_cls 154 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca11g04241 433 SMART WRKY_cls 318 377 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca11g04241 433 MobiDBLite consensus disorder prediction 262 288 - -
Seca11g04241 433 MobiDBLite consensus disorder prediction 207 288 - -
Seca11g04241 433 MobiDBLite consensus disorder prediction 216 259 - -
Seca11g04241 433 SUPERFAMILY WRKY DNA-binding domain 153 213 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca11g04241 433 SUPERFAMILY WRKY DNA-binding domain 310 378 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca11g04241 433 ProSiteProfiles WRKY domain profile. 313 378 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca11g04241 433 ProSiteProfiles WRKY domain profile. 154 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca11g04241 433 Gene3D WRKY domain 140 214 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca11g04241 433 Gene3D WRKY domain 303 379 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca11g04241 433 FunFam WRKY transcription factor 33 305 371 - -
Seca11g04241 433 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 121 400 IPR044810 GO:0003700
Seca11g04241 433 Pfam WRKY DNA -binding domain 319 376 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca11g04241 433 Pfam WRKY DNA -binding domain 155 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04241 Seca-Chr11 120688325 120692876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04241 17 433 WRKY Transcription Factor Family AT2G03340 52.611 1.18e-147 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca11g04241 WRKY 4.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04241 - - gmx:100799335 580.096