Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04215 ATGGGGAACAAGAGAAAAGGAAGGGAAGGAGAAGGAGGGGAAAACAACAGTGAAGAAGGGAACATTGAATGGAAACAGATAAGGGAAGAGGCAGCATCAGTAGCTGCTGCTCTACTTGGTGCTAGAAGAGCAAGAAAACGTTACATTGGAGTGCGTCAAAGGCCTTCAGGGAGATGGGTTGCTGAAATCAAAGACACCATACAGAACATTAGATTATGGTTAGGCACATATGACACTGCTGAAGAGGCTGCTAGAGCTTATGATGAGGCTGCACGTTTACTTCGTGGTGCTAACACTCGCACAAATTTCTTTCCTTGTCAATCTTCTCATTCTATTCCAGCTCTTCCTCCAAAGATTGCCAAACTCCTCCTTCTTAGGCTCAAAGCTAGAAACATTGCTTCATCTTGTATGGTCCCTGCTCCTTTTCCTAGTGACCACAATGAGCAAGAAACCAAGGCAGAACAAATCGAACCTCAATTTTTTGACCAAATAGAAGAACCCCATTTTGAAATTTTTTTAGGAAGTTATGGTGGTGCTAGTTATTCTTTTACTGACACAACTGCTTGTGACTATAGTAGTGGAGCTAAGGAAGGAAATCTTAACCAAGAGGGTAGCAGTAGCAGAGAGGATTCTAGATACCATTGTGCTAACAATGTTGTTGATGATGGAAACAATCAGATTGTGAGGGGAAAAGGAGAATCTGAAGACTATGATGTTGGGCTCATTGACTTTCAGTTTTTGGATTCTGTTGGATCATTGAGTTACTCTTCTTCTCCATTTGAGATAGCAGAGGAGATGGTGGGGCCAATAGAGGAAGAGAAATACAATATGGATGATTCACCTCTAGTTAGAGAAACTTTTAGGATGAAGTATGAACGTAAATTCTCAGCTTGTCTTTACACCTTGAGTGGGGTGTCTGAGTGTTTGAGGTTACAAGTTGGCCCTGAAAAGGGAAAGGAATTGGAAAATATTTTAGGATGA 981 0.4149 MGNKRKGREGEGGENNSEEGNIEWKQIREEAASVAAALLGARRARKRYIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDTAEEAARAYDEAARLLRGANTRTNFFPCQSSHSIPALPPKIAKLLLLRLKARNIASSCMVPAPFPSDHNEQETKAEQIEPQFFDQIEEPHFEIFLGSYGGASYSFTDTTACDYSSGAKEGNLNQEGSSSREDSRYHCANNVVDDGNNQIVRGKGESEDYDVGLIDFQFLDSVGSLSYSSSPFEIAEEMVGPIEEEKYNMDDSPLVRETFRMKYERKFSACLYTLSGVSECLRLQVGPEKGKELENILG. 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04215 326 MobiDBLite consensus disorder prediction 1 15 - -
Seca11g04215 326 SMART rav1_2 47 111 IPR001471 GO:0003700|GO:0006355
Seca11g04215 326 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 21 210 - -
Seca11g04215 326 FunFam ethylene-responsive transcription factor RAP2-11 46 105 - -
Seca11g04215 326 MobiDBLite consensus disorder prediction 1 22 - -
Seca11g04215 326 SUPERFAMILY DNA-binding domain 47 103 IPR016177 GO:0003677
Seca11g04215 326 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Seca11g04215 326 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700|GO:0006355
Seca11g04215 326 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Seca11g04215 326 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Seca11g04215 326 CDD AP2 46 103 IPR001471 GO:0003700|GO:0006355
Seca11g04215 326 Pfam AP2 domain 47 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04215 Seca-Chr11 119046847 119047827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04215 45 123 AP2-EREBP Transcription Factor Family AT5G19790 65.854 2.95e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca11g04215 AP2 7.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04215 K09286 - gmx:100793940 344.739