Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04210 ATGAGTTCCGGCAGCAGCACGGAGAAGGAGAAGGAAAAGGAGAAGGCGAGGGTGAGCCGCACATCGCTGATACTGTGGCACGCTCATCAAAACGACGCCGCAGCGGTTCGGAAGCTTCTTCAAGAGGATCCCTCGCTGGTGAACGCCAGAGATTACGACAATCGCACTCCGCTCCACGTGGCATCCCTCCACGGCTGGATCGACGTCGCCAATTGCTTAATTGAATTCGGCGCCGATGTCAACGCCCAGGATCGTTGGAAAAACACTCCTCTGGCTGATGCAGAAGGAGCTAAAAGGACTGACATGATCGAGCTTTTGAAATCACATGGAGGCTTGTCTTTTGGTCAAAACGGAAGCCATTTTGAACCCAGACCTGTTCCGCCCCCGTTGCCTAACAAGTGTGATTGGGAAATCGACCCTTCCGAATTGGACTTCACAAATGCGTTGCGTGTTGGAAAGGGATCTTTCGGTGAGATTTTGAAAGCCCATTGGCGTGGAACGCCAGTTGCTGTCAAACGCATTCTTCCATCTCTTTTAGAAGATAGATTGGTCATTCAGGACTTTAGGCATGAGGTCAATTTGTTAGTGAAGCTTCGACACCCCAATATAGTTCAGTTTCTTGGAGCTGTTACTGAGAAGAAGCCCCTTATGTTAATTACTGAGTATCTAAGAGGGGGTGATCTTCATCAGTACCTCAAAGAAAAAGGTGCGCTTAGTCCTTCTACAGCTATCAACTTTTCCATGGACATTGCCAGAGGAATGGCTTATCTTCACAATGAACCAAATGTTATAATACACAGGGACCTAAAGCCAAGGAATGTTCTTTTAGTCAATTCTAGTGCTGACCATTTAAAAGTTGGAGATTTCGGATTGAGTAAGCTTATCACTGTCCAGAGTTCTCATGATGTATACAAGATGACTGGTGAAACGGGGAGCTACCGCTATATGGCTCCTGAAGTTTTCAAACATCGGAGATATGATAAGAAGGTTGATGTGTACTCCTTTGCAATGATTTTGTATGAGATGCTTGAAGGTGAACCACCTTTTGCAAGTTATGAACCCTATGAAGGAGCAAAACATGCTGCTGAAGGACACAGGCCTACTTTTCGGGCAAAGGGTTATGTCCCTGAATTGCAAGAGTAA 1143 0.4628 MSSGSSTEKEKEKEKARVSRTSLILWHAHQNDAAAVRKLLQEDPSLVNARDYDNRTPLHVASLHGWIDVANCLIEFGADVNAQDRWKNTPLADAEGAKRTDMIELLKSHGGLSFGQNGSHFEPRPVPPPLPNKCDWEIDPSELDFTNALRVGKGSFGEILKAHWRGTPVAVKRILPSLLEDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTEKKPLMLITEYLRGGDLHQYLKEKGALSPSTAINFSMDIARGMAYLHNEPNVIIHRDLKPRNVLLVNSSADHLKVGDFGLSKLITVQSSHDVYKMTGETGSYRYMAPEVFKHRRYDKKVDVYSFAMILYEMLEGEPPFASYEPYEGAKHAAEGHRPTFRAKGYVPELQE. 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04210 380 PIRSF ILK 1 380 - -
Seca11g04210 380 ProSiteProfiles Ankyrin repeat profile. 53 85 IPR002110 GO:0005515
Seca11g04210 380 FunFam serine/threonine-protein kinase STY8 1 119 - -
Seca11g04210 380 SUPERFAMILY Protein kinase-like (PK-like) 124 369 IPR011009 -
Seca11g04210 380 Gene3D Phosphorylase Kinase; domain 1 130 224 - -
Seca11g04210 380 ProSitePatterns Protein kinases ATP-binding region signature. 151 172 IPR017441 GO:0005524
Seca11g04210 380 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 75 371 - -
Seca11g04210 380 SMART ANK_2a 86 116 IPR002110 GO:0005515
Seca11g04210 380 SMART ANK_2a 53 82 IPR002110 GO:0005515
Seca11g04210 380 CDD STKc_MAP3K-like 151 368 - -
Seca11g04210 380 Gene3D Transferase(Phosphotransferase) domain 1 225 373 - -
Seca11g04210 380 FunFam serine/threonine-protein kinase STY46-like 138 224 - -
Seca11g04210 380 SMART serkin_6 145 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g04210 380 Pfam Ankyrin repeats (many copies) 39 91 IPR002110 GO:0005515
Seca11g04210 380 Gene3D - 2 119 IPR036770 -
Seca11g04210 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Seca11g04210 380 SUPERFAMILY Ankyrin repeat 22 110 IPR036770 -
Seca11g04210 380 Pfam Protein tyrosine and serine/threonine kinase 150 368 IPR001245 GO:0004672|GO:0006468
Seca11g04210 380 ProSiteProfiles Ankyrin repeat region circular profile. 53 85 - -
Seca11g04210 380 ProSiteProfiles Protein kinase domain profile. 145 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04210 Seca-Chr11 118757808 118770161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04210 2 380 MAP Kinase Kinase Kinase AT1G14000 85.224 0.0 668
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Seca11g04210 PK_Tyr_Ser-Thr 6.6e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04210 - - gmx:100793237 714.531