Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04197 ATGGGGAGGTCACCATGCTGTGAAAAGGTGGGGTTGAAGAAAGGGCCATGGACCCCGGAAGAAGACCAAAAGCTCATGGCTTACATTGAAGAATATGGCCATGGAAGCTGGCGTGCACTGCCTGCCAAAGCTGGCCTTCAAAGATGTGGAAAGAGCTGCAGACTGAGGTGGACTAACTACCTTCGACCTGATATAAAAAGAGGAAAGTTCAGCTTACAAGAAGAGCAAACCATTATTCAACTCCATGCCCTTCTTGGAAACAGATGGTCAGCAATAGCGGCTCAACTGCCGAAGAGAACAGACAATGAGATAAAGAACTATTGGAACACACACCTCAAGAAAAGGCTAACCAGAATGGGCATAGACCCAACAACCCACAAGCCCAAAACCAACGCCCTTGGTGGTTCTAGTGGCTGCCACTCCAAAGAGGCAGCCAACCTGAGCCACATGGCTCAGTGGGAGAATGCTCGTCTTGAAGCCGAAGCAAGACTTGTGAGAGAAGCCAAGTTGCAGTTACAACTCCAAAACCAAAACAACTCAACCACACATCCACCTGCAAGGCTCGTTCTCAACAAAATCACAAGACAACATCCATCACTACCACCATGCCTTGATATCCTCAAGGCATGGCAAACTTCATGGACATCCAAGCCACAACCAACTAATAACAACAACAAGATGCATAGCATGTATGCCATGATGCTATCCACTGATGACACCCTTGAATCCCCAACATCAACGTTGAACTTCCCCGGAACCGTCCTTCCACTTCCTACCAACAACGTTGGACTAATCAATGAAAATCTACTCCCACTCACCACCACTAATATTGTCATGACACCCATGGATCAGTTTAACAAAAGTTCTTCAGCTATTAGTGACAATAATGAGTCATGGAAATATTTGTATTTAACGAAGGAAGGTGAAAGGAAGGTGGAGAACACGATGTTGAACTTGCAAGACGACGACGACATTATGGCGGCTGTGGAAGCATTTAGATCTGGTGGGTACGACAACAACAACAATATTATGAGTGTACGTATGTCCACACTCTCAAGCAATAATATTAATGTCCTCGAAGCACTCAACAATGATGATGCGGTGGTTTATGATTCCTCCTTAGCGGATGAAGAGAAGTTGGCAATGGTTAATGGGGATGGAGGATCCAGCATGTGCAACGTGAACATGGAGGAGAATAAGCATTACTGGACCAGTATACTTAATAACTTGGTGAATGACTCGTTGTCTGGTTCGTCAGTGTTCTGA 1266 0.455 MGRSPCCEKVGLKKGPWTPEEDQKLMAYIEEYGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAQLPKRTDNEIKNYWNTHLKKRLTRMGIDPTTHKPKTNALGGSSGCHSKEAANLSHMAQWENARLEAEARLVREAKLQLQLQNQNNSTTHPPARLVLNKITRQHPSLPPCLDILKAWQTSWTSKPQPTNNNNKMHSMYAMMLSTDDTLESPTSTLNFPGTVLPLPTNNVGLINENLLPLTTTNIVMTPMDQFNKSSSAISDNNESWKYLYLTKEGERKVENTMLNLQDDDDIMAAVEAFRSGGYDNNNNIMSVRMSTLSSNNINVLEALNNDDAVVYDSSLADEEKLAMVNGDGGSSMCNVNMEENKHYWTSILNNLVNDSLSGSSVF. 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04197 421 Gene3D - 69 116 - -
Seca11g04197 421 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca11g04197 421 CDD SANT 69 112 IPR001005 -
Seca11g04197 421 FunFam MYB-related transcription factor 13 66 - -
Seca11g04197 421 CDD SANT 16 61 IPR001005 -
Seca11g04197 421 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca11g04197 421 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca11g04197 421 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca11g04197 421 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca11g04197 421 Gene3D - 13 66 - -
Seca11g04197 421 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca11g04197 421 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca11g04197 421 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 283 - -
Seca11g04197 421 Coils Coil 155 178 - -
Seca11g04197 421 MobiDBLite consensus disorder prediction 121 141 - -
Seca11g04197 421 SMART sant 66 114 IPR001005 -
Seca11g04197 421 SMART sant 13 63 IPR001005 -
Seca11g04197 421 FunFam MYB transcription factor 68 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04197 Seca-Chr11 118185326 118187564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04197 1 255 MYB Transcription Factor Family AT3G01140 65.490 3.48e-106 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca11g04197 Myb_DNA-binding 8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04197 K09422 - gmx:100799222 531.176