Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04179 ATGTGCAGGATGGGCAGGGTAAAGCTAAAGATAAAAAGGCTAGAGAACACCAATGGCCGCCAGGCAACATATGCTAAAAGGAAGAATGGAATCATGAAAAAAGCTTCTGAATTATCTATACTATGCGATGTAGATATTATACTTCTCATGTTCTCACCAAGTGGAAAGCCTTCGATGTGCAGGGGGAGGCGCAGTAACTTCGAGGAGGTTATTGCAAAGTTTGGTCAGCTAACTCCACAAGAGAGAGCAAAAAGGAAGTTGGAGAGTCTTGAAGCACTGAAGAAAACATTTAAGAAGTTAGATCATGATGTAAATATACAAGAATTTATGGGTGCAAGTAGTCAAGCTATGGAGGACCTAAGTAATCAAGCCAACCTATTACAGAATCAAATTTCTGAAGTCCATAAGAGATTAAGTCATTGGACCGAGCTTGATAAAATAAGCAGTGTTGAACAATTGGGACAAATGGAAAATTCACTTAGGGAGTCACTTAATCAAATTCACACCCGTAAGGAAAATATAAAAAAACAACAACTTGCGTCGCTTCAATGTAATAACCAGTTCAATGAAACAAATATTCCCTTCAGAATGAGTGTAGAGCAGCATCTACAACCTCTATCATGGATTGCTAATGGTGACAACCAAAATTTAGTTTTACCTGAGGACTCAAACTTGTTTCTCCACAAAGATGTAGAAGGATCCACAAGCTCATCTTTTGGGAGTTATGCCAGTTATCTTGGCTCGAATTGCACCCCTGAAATTTCTAACTCTGGGCAAGAAAATTGTGTCCTTGGTGACATAAACAATAATGTCGCTCTTAGACTACAAATGAGTGGGCAGTTTCAATACCTTCCATACAATTTTAATATGTGGAATAATTTGAAGTTTCAACCAGCTACAGAGATCAATCCGCATGAGAACCACGTAGATTATCATGTAAATGGAAGCCTTGAAGCCCCTAGACCTGGTTTTGATTCTAACCACCATGGATGGGCTTCCACATCAGGGCCTTGTGCTGTCAGTATGTTTGATGAGCACTTGTACGCCCAGCAACCAAACTGA 1062 0.3974 MCRMGRVKLKIKRLENTNGRQATYAKRKNGIMKKASELSILCDVDIILLMFSPSGKPSMCRGRRSNFEEVIAKFGQLTPQERAKRKLESLEALKKTFKKLDHDVNIQEFMGASSQAMEDLSNQANLLQNQISEVHKRLSHWTELDKISSVEQLGQMENSLRESLNQIHTRKENIKKQQLASLQCNNQFNETNIPFRMSVEQHLQPLSWIANGDNQNLVLPEDSNLFLHKDVEGSTSSSFGSYASYLGSNCTPEISNSGQENCVLGDINNNVALRLQMSGQFQYLPYNFNMWNNLKFQPATEINPHENHVDYHVNGSLEAPRPGFDSNHHGWASTSGPCAVSMFDEHLYAQQPN. 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04179 353 Gene3D - 17 100 IPR036879 GO:0003677|GO:0046983
Seca11g04179 353 FunFam Agamous-like MADS-box protein AGL30 17 99 - -
Seca11g04179 353 Coils Coil 110 137 - -
Seca11g04179 353 PRINTS MADS domain signature 6 26 IPR002100 GO:0003677|GO:0046983
Seca11g04179 353 PRINTS MADS domain signature 41 62 IPR002100 GO:0003677|GO:0046983
Seca11g04179 353 PRINTS MADS domain signature 26 41 IPR002100 GO:0003677|GO:0046983
Seca11g04179 353 Coils Coil 80 100 - -
Seca11g04179 353 PANTHER SERUM RESPONSE FACTOR HOMOLOG 6 204 - -
Seca11g04179 353 SMART madsneu2 4 63 IPR002100 GO:0003677|GO:0046983
Seca11g04179 353 SUPERFAMILY SRF-like 5 98 IPR036879 GO:0003677|GO:0046983
Seca11g04179 353 CDD MADS 5 57 - -
Seca11g04179 353 ProSiteProfiles MADS-box domain profile. 4 56 IPR002100 GO:0003677|GO:0046983
Seca11g04179 353 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04179 Seca-Chr11 117240996 117250642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04179 4 353 Type I MADS-box Gene Family AT2G03060 49.086 7.26e-109 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca11g04179 SRF-TF 3.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04179 - - gmx:100811701 574.318