Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04170 ATGAAGGCATGGCCAGCAAGTGTTATATACTCTTCTTCACAAGAAAACACCACCAATGGCTTAAGTTGTTACCCATCTTCTTCCACTGCCCCTTCTCCTTCTATGGGAATGGTTTATGCTGACATGGGTTCTCTATCTCTTTGTTCCAACTATGGTGTGGTTTCAGCTCTTTCTACTTCTTCTTCTTCTCATGATTGCTATGTCTCAAAGAGCTTAGCTATGGAAAAAGGGGGTACAAGCTGGTCTTTACCATTCACAAGAAACTATGAGGAACATCCCAATAGTGATGTTGGGGAGGGTAAAGGGTCTGATTGCAGTGATGGGGTTGGGGAAAACAGTGAGAAAATGAACCATAATAATGAAGAGAACCCTAGTGAGAATTGTGTCAGTGGCAAAGAGGCAGATACTGGGCATTCCAAACTATGTGCAAGAGGGCATTGGAGGCCTGCAGAAGATTCCAAGCTCAAGGAACTTGTAGCTCTTTATGGGCCTCAGAACTGGAACCTGATAGCCGAAAAGTTAGAAGGCAGATCAGGCAAGAGCTGTAGGCTGAGATGGTTCAACCAGTTGGATCCAAGGATCAATAGGAGAGCTTTCACTGAAGAAGAGGAAGAAAGGCTAATGCAGGCACATAGGATTTATGGCAACAAATGGGCCATGATTGCAAGGCTTTTCCCTGGAAGAACTGATAATGCTGTCAAGAATCACTGGCATGTTATAATGGCCAGAAAGTACAGAGAACAATCCAGTGCTTACAGGAGGAGGAGGCTAAGCCAATCTGTTTACAGAAGAATGGAGGAAAATACAAGCTTTGTCTCTAGAGACATAATCACAGGGACAGAACCACCACCACCACCACCCTATTGTCTCAATCTCCCTAATAACATGGTTAATTTCCCTTATGCTGACTTTCATGGTGCTGATGGTGGGGTTGAGTTTGGCTTAAATGGTTCACCCCACATGACTGGTGGGAAAGAAGCAATCTCAAGCAACAAGCAGGCCCCTCCTCATATTGCCTTGTATGCTCCACAGACACCACTTGATTTCTTCTCTGGTGGTAGAAGCAATGACATGGTGGGTGAATATTTAGGCCAGATGAGATGTTGGGAAAGGCCAAGTGATGTTCCTCTTCCTCTTCCTCCTCCACCTCCTTCTCAATATCAACAATCTGGTTTCTACCCTCATTACCCCCAACAATATCTGATGCTAATGCAACAACAACAGCAGCAAAATTACAATAACAATTTTTACAGCTTCTCAAATTCCACAGCTCCAACATCACAGATATTGGCCAGTGAACCTTCACTATCATCAGTGGCAGAACACAGAGATGAAGCCCTGACCAGTGACACCCCAGATGCAATTCCACCTCCATTTATTGACTTCCTTGGGGTAGGAGCCACATGA 1407 0.4463 MKAWPASVIYSSSQENTTNGLSCYPSSSTAPSPSMGMVYADMGSLSLCSNYGVVSALSTSSSSHDCYVSKSLAMEKGGTSWSLPFTRNYEEHPNSDVGEGKGSDCSDGVGENSEKMNHNNEENPSENCVSGKEADTGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLSQSVYRRMEENTSFVSRDIITGTEPPPPPPYCLNLPNNMVNFPYADFHGADGGVEFGLNGSPHMTGGKEAISSNKQAPPHIALYAPQTPLDFFSGGRSNDMVGEYLGQMRCWERPSDVPLPLPPPPPSQYQQSGFYPHYPQQYLMLMQQQQQQNYNNNFYSFSNSTAPTSQILASEPSLSSVAEHRDEALTSDTPDAIPPPFIDFLGVGAT. 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04170 468 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 144 190 IPR017930 -
Seca11g04170 468 CDD SANT 147 188 IPR001005 -
Seca11g04170 468 FunFam MYB transcription factor 144 195 - -
Seca11g04170 468 ProSiteProfiles Myb-like domain profile. 191 241 IPR001005 -
Seca11g04170 468 CDD SANT 198 238 IPR001005 -
Seca11g04170 468 Pfam Myb-like DNA-binding domain 196 239 IPR001005 -
Seca11g04170 468 Pfam Myb-like DNA-binding domain 144 190 IPR001005 -
Seca11g04170 468 SMART sant 143 192 IPR001005 -
Seca11g04170 468 SMART sant 195 243 IPR001005 -
Seca11g04170 468 Gene3D - 197 268 - -
Seca11g04170 468 SUPERFAMILY Homeodomain-like 144 237 IPR009057 -
Seca11g04170 468 MobiDBLite consensus disorder prediction 85 132 - -
Seca11g04170 468 ProSiteProfiles Myb-like domain profile. 144 190 IPR001005 -
Seca11g04170 468 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 191 245 IPR017930 -
Seca11g04170 468 FunFam MYB transcription factor 197 268 - -
Seca11g04170 468 Gene3D - 144 195 - -
Seca11g04170 468 PANTHER MYB PROTEIN-RELATED 129 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04170 Seca-Chr11 116984574 116987175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04170 29 261 MYB Transcription Factor Family AT1G69560 54.393 2.85e-76 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca11g04170 Myb_DNA-binding 2.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04170 K09422 - vvi:100253313 523.857