Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04164 ATGGATCTGCAAAATCAAAGCATGAGTTTGGTTCTGTCTACTGATGCCAAGCCTAGGCTGAAATGGACTCCTGAGCTTCACCAACGTTTCACTGAGGCAATTAATCAGCTTGGAGGTGCAGAAAAGGCAACCCCAAAGAGTCTTATGAGGGTAATGGGGATTCCAGGACTCACTTTGTACCACCTTAAGAGCCATTTACAGAAATATAGACTTGGGAAAAGCCAACAGCTAGAAACCTGCTCTGACAACAAACAACAAGATTACAGAGAAATCCAGAGCAGTGATGTTCATTCCAGCAGTATTGGGACCCAGAATGAGATGACTGAGTAA 330 0.4394 MDLQNQSMSLVLSTDAKPRLKWTPELHQRFTEAINQLGGAEKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQQLETCSDNKQQDYREIQSSDVHSSSIGTQNEMTE. 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04164 109 MobiDBLite consensus disorder prediction 80 109 - -
Seca11g04164 109 FunFam Myb family transcription factor 16 74 - -
Seca11g04164 109 Gene3D - 16 75 - -
Seca11g04164 109 MobiDBLite consensus disorder prediction 92 109 - -
Seca11g04164 109 NCBIfam myb-like DNA-binding domain, SHAQKYF class 17 72 IPR006447 GO:0003677
Seca11g04164 109 Pfam Myb-like DNA-binding domain 19 70 IPR001005 -
Seca11g04164 109 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 6 99 IPR044848 GO:0003700
Seca11g04164 109 SUPERFAMILY Homeodomain-like 16 72 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04164 Seca-Chr11 116591839 116592813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04164 1 84 G2-like Transcription Factor Family AT1G69580 71.429 6.17e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca11g04164 Myb_DNA-binding 1.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04164 - - gmx:100805252 188.348