Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04153 ATGGACTTGACCTCCATCAGTACCCGGAACATAGATGCAGATACTCAAACCCAACCCACTAACACCCAAACCTCCAAGTCCTTATCTTTCACCAACGGGTCACTCAAACGCCACCCTCCTCCGCCGTTGCCACAACCACCGTCCATGGTGGTTTCCTACAAAGAATGCCTCAAAAATCATGCTGCCACCATAGGTGGTCATGCACTTGATGGTTGTGGTGAGTTCATGCCTTCTTCTTCCACTAACCCCACTGACCCTCGCTCCCTCAAATGTGCAGCTTGTGGTTGCCACCGCAACTTCCACCGCCGTGACCCTCAAGACCCAAACCCAAACCCCACTTTTCTCAGCTGCATCTATTCCCCTTCAGCACCACCACCACCACCACCACAACCACTACCTCACCGTGGAATTAGCCAAAGCACAAGTCCAAGCCAGAGTTCTAGTCCTAGTCACAGTCCAAGCCCTATGTCAAGCCCTTCACCACCACCACTCTCACATTTACCACCTTATCACCACCATCACACTTCAGCACCTCACATGCTTTTAGCACTTGGCTCTGCCTATTCTGCACCTTCCTCTGATGAGCATCAGCATCACAGGAATCTCAAATTTTCTTCTGTGGTGATGAAAACTGAGATTAACCCAAGTGGGAAGAAGAGGCACAGGACGAAATTCACCAAGGAGCAGAAGGAGAAGATGTGTAGCTTTTCTGAGAAATTGGGTTGGAGAATGCAGAAAGGGGATGATGGATTGGTTCAGAAATTCTGTGATGATATTGGTGTCTCTAGAGGGGTTTTCAAGGTTTGGATGCATAATAACAAGAACACGTTTAAGAAGAGATCAGAAGTGGGAAATGCTCCTCAAATGGAAAAGATCACTGGGGAAGATGATGATGGGAATGATGGTGGAAGTGGTGGTGGTGGTTTTGATAGTGATATTAACAACCCTTACAACCCAAATAGCAGCAGCAATGACATTCACATAAATGAAGATAGCTGTGTCAATGTTCATGTTTCTCTTAATGGGTTGTCCTCTTGA 1038 0.4721 MDLTSISTRNIDADTQTQPTNTQTSKSLSFTNGSLKRHPPPPLPQPPSMVVSYKECLKNHAATIGGHALDGCGEFMPSSSTNPTDPRSLKCAACGCHRNFHRRDPQDPNPNPTFLSCIYSPSAPPPPPPQPLPHRGISQSTSPSQSSSPSHSPSPMSSPSPPPLSHLPPYHHHHTSAPHMLLALGSAYSAPSSDEHQHHRNLKFSSVVMKTEINPSGKKRHRTKFTKEQKEKMCSFSEKLGWRMQKGDDGLVQKFCDDIGVSRGVFKVWMHNNKNTFKKRSEVGNAPQMEKITGEDDDGNDGGSGGGGFDSDINNPYNPNSSSNDIHINEDSCVNVHVSLNGLSS. 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04153 345 MobiDBLite consensus disorder prediction 154 168 - -
Seca11g04153 345 Gene3D - 206 279 - -
Seca11g04153 345 SUPERFAMILY Homeodomain-like 211 279 IPR009057 -
Seca11g04153 345 MobiDBLite consensus disorder prediction 279 328 - -
Seca11g04153 345 MobiDBLite consensus disorder prediction 189 230 - -
Seca11g04153 345 MobiDBLite consensus disorder prediction 1 34 - -
Seca11g04153 345 MobiDBLite consensus disorder prediction 100 174 - -
Seca11g04153 345 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 27 276 - -
Seca11g04153 345 MobiDBLite consensus disorder prediction 119 134 - -
Seca11g04153 345 NCBIfam homeobox domain, ZF-HD class 218 275 IPR006455 -
Seca11g04153 345 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 53 104 IPR006456 -
Seca11g04153 345 MobiDBLite consensus disorder prediction 135 153 - -
Seca11g04153 345 FunFam Zinc-finger homeodomain protein 2 206 279 - -
Seca11g04153 345 Pfam ZF-HD protein dimerisation region 51 105 IPR006456 -
Seca11g04153 345 MobiDBLite consensus disorder prediction 1 48 - -
Seca11g04153 345 MobiDBLite consensus disorder prediction 311 328 - -
Seca11g04153 345 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 53 104 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04153 Seca-Chr11 115775542 115776579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04153 19 310 ZF-HD Transcription Factor Family AT3G28920 44.737 7.24e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca11g04153 ZF-HD_dimer 5.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04153 - - vum:124843063 411.379