Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04142 ATGATGAACCTAAAGATCATAGTGGCTAAAATAGACATATTCCATCTTGTTTCTAGCATGTGGATGATCCCAATTGAACGTTTCTCCATGTGGATGGGTGGCTTCAGACTATCTGAATTCATTACGGTGTCTACAACTCTGAAGCCACCAATCCTTATGAATCAACGTTCAATCGGGATCATCCACATGATAGAGACAAGATGGAATATGTCAGTTTTGACCACTATGCTCTTGAGGTTCATCAATTGA 249 0.3976 MMNLKIIVAKIDIFHLVSSMWMIPIERFSMWMGGFRLSEFITVSTTLKPPILMNQRSIGIIHMIETRWNMSVLTTMLLRFIN. 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04142 82 PANTHER TRANSCRIPTION FACTOR TGA9 1 48 - -
Seca11g04142 82 Pfam Seed dormancy control 2 42 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04142 Seca-Chr11 115488495 115488743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04142 1 60 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 50.000 5.51e-14 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04142 K14431 - pop:7485463 67.3958