Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04135 ATGGAAGAGAGAAATGATGATGAGAAACTTGATGAGGTTATGCTACCGGGATTCAGGTTTCATCCAACCGATGAAGAGCTTGTTGGATTTTATCTCAAAAGGAAGATTCAGCAAAGGTCTCTCTCTATTGAGCTCATCAAGCAGCTTGATATATATAAATATGATCCTTGGGATCTTCCAATAGAGTTGGCCACTACTGGGGAGAAGGAGTGGTATTTCTACTGTCCAAGAGATAGAAAGTACAGGAACAGTGCAAGGCCTAATAGGGTTACAGGAGCTGGGTTTTGGAAAGCTACAGGGACTGACAGGCCTATATACTCCTCAGAAGGTTCTAGATGTATTGGCCTCAAGAAGTCCCTTGTGTTCTACAGAGGTAGAGCTGCTAAAGGAGTCAAAACTGATTGGATGATGCATGAGTTTAGGCTTCCTTCTCTCACTAACTCATCATCTTCTCCTAAGAAGTACTTAGACAAGACTATTCCTCCTAATGAATCTTGGGCAATCTGCAGGATATTCAAGAAAACCAATGCTACAGCTCAAAGAGCTCTCTCTCATCACTCTTGGGTTCCTCCCTTACCTGAAGCAACAACCACCGTTGATATGCTAACCAATGGTGGAGATGGAAACCAATTTTGTTCACCAAACATGTCATTATTGACAAAGAAACCTAGCTTAGCCACTCACTTTTGCACAGTTAACCACAATGACACACAACACTTAACCACTCCTAGTAGTAGTACTCTTTGTCCTTTAGATGTTGCCTACAATAAGTCCATTAATGTTAATCCATTGGTTTCCAAACCCTTTGATAGGTTACCAACTTCAAATGGAGACCATAGCTCAATATTCTCATCACCTCTTGAAATATCTTCAATTAGCACTAAATCATCTTCAAGGGATGTTTCTTCCTTGCTATTGAGTATGTCATCTTCTGTGCTTGGAGATTTTGGTAAGACCTCTGAGGGAACAACTCCAAACTTTGGTGGGTTACAAGAGCATAGTCATGGCTACCCAATACCATTACTACGTGAAATGCAAGGGGCTATTGGCAACCAAGATGATAATGTATTGGTAAAAATTCCAAATGTGAATGTGCCTCATGTTGATGTTCCTTTCAATATGCCTTTCAATATTGGTGATGCATGGAAGTTGAACTCGCTTTGGGATACTACTTCTTCCTCTTGTCCTTCCGATGCTCCTTCTAGTTATTCTACAACTAAGTGTTATACTTAG 1233 0.4063 MEERNDDEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRSLSIELIKQLDIYKYDPWDLPIELATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSRCIGLKKSLVFYRGRAAKGVKTDWMMHEFRLPSLTNSSSSPKKYLDKTIPPNESWAICRIFKKTNATAQRALSHHSWVPPLPEATTTVDMLTNGGDGNQFCSPNMSLLTKKPSLATHFCTVNHNDTQHLTTPSSSTLCPLDVAYNKSINVNPLVSKPFDRLPTSNGDHSSIFSSPLEISSISTKSSSRDVSSLLLSMSSSVLGDFGKTSEGTTPNFGGLQEHSHGYPIPLLREMQGAIGNQDDNVLVKIPNVNVPHVDVPFNMPFNIGDAWKLNSLWDTTSSSCPSDAPSSYSTTKCYT. 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04135 410 ProSiteProfiles NAC domain profile. 14 174 IPR003441 GO:0003677|GO:0006355
Seca11g04135 410 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 242 - -
Seca11g04135 410 Gene3D NAC domain 23 179 IPR036093 GO:0003677|GO:0006355
Seca11g04135 410 SUPERFAMILY NAC domain 13 174 IPR036093 GO:0003677|GO:0006355
Seca11g04135 410 FunFam NAC domain-containing protein 35 23 177 - -
Seca11g04135 410 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04135 Seca-Chr11 115344406 115346384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04135 1 305 NAC Transcription Factor Family AT1G26870 55.319 9.76e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca11g04135 NAM 5.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04135 - - vra:106768003 548.125