Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04116 ATGGAGGAGGGTAAAAAAACCAAAGGAAAACAAAAGATTGAGATTAAGAAGATTGATAAAGCAAATGATCTCTCTAGTACTTTCGCAAAGCGAAAATATGGCGTTCACAAGAAGGCTTATGAGTTATCAAAACTTTGTGGGGCTAGGGTTGATATACTCATGTTTTCTCCATGTGGAAGATTATTCAGTTATGGGGATCCTTCTCTCCGATTGTTGACAAGGACAATTTCAGATGATGAGCACCCTTTAGAAGGCGTCAACTATGATCAACTTGTAGAGGATCACAAGAGATCGGAGATCGATGAAATCAACGAAAAACATGACGCACATCAAGATCAATTGTATGTTGAGAAAGCACATGAGAAAAAACTAAAGGACATATTGAAGACAAGGAAAAATGATGGCTGGTGGGAGGCCAAAGTGCAAGGTCTTAGTTGTGAACATGCTCAGGAAATTGAAGCAAGTCTTTTAGAATTACATGAAAAATTGTCAAATGAACTTCCAATCAAGTGTGGAGGAAATGCTTCTCATGGTATGGTCTCTTTAACTTAA 552 0.3786 MEEGKKTKGKQKIEIKKIDKANDLSSTFAKRKYGVHKKAYELSKLCGARVDILMFSPCGRLFSYGDPSLRLLTRTISDDEHPLEGVNYDQLVEDHKRSEIDEINEKHDAHQDQLYVEKAHEKKLKDILKTRKNDGWWEAKVQGLSCEHAQEIEASLLELHEKLSNELPIKCGGNASHGMVSLT. 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04116 183 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Seca11g04116 183 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Seca11g04116 183 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Seca11g04116 183 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Seca11g04116 183 PANTHER MADS BOX PROTEIN 10 163 - -
Seca11g04116 183 SUPERFAMILY SRF-like 9 72 IPR036879 GO:0003677|GO:0046983
Seca11g04116 183 Gene3D - 21 83 IPR036879 GO:0003677|GO:0046983
Seca11g04116 183 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Seca11g04116 183 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04116 Seca-Chr11 114463831 114464382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04116 3 176 Type I MADS-box Gene Family AT3G04100 32.967 3.70e-25 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca11g04116 SRF-TF 2.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04116 - K12412 gmx:102665718 167.162