Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04100 ATGTCATCATCGAATTCTCCATGCGCGGCGTGTAAGATTCTTCGTCGCAAGTGCAAACAAGAGTGTATTTTTGCTCCGTACTTTCAGCCAGAGAACTCGCAACGGTTCATATGTGTGCACCGTGTGTTCGGTGCTAGCAACGTGGCAAAACTTTTGAAGGAGTTGATGGTGTCGCAGCGAGGTGACGCCGTTAGGTCACTGGCCTATGAGGCTGAGGCACGTCTGAGGGACCCCGTCTACGGGTGCGTTGGGTTCATCTCGGTGCTTCAGCAGCGACTGAAGCAAATCCAAACCAAGCTTGAGAATGCTAAGAAGGAATTGACTACTTACCTTAGTCCACAAGCTATGGAGTACTTTCTGGCCAATCCTAGTGCGTTACTCACGAAACAAAATAACTCACAGGGGAACCCGTTCGTGCTTTTTCCTAACTACATTCCGCCGATTTTGTCGGGCCATGGGGGCGGACATTTGGGGCTTATGGAAGCTCAACATCTTGCTGCTGTGGCCACAGAGCAGAAGCAGGTCATCGTCCAGCAACAACAGCAAAAGTTTATGAGGTTCGAAACGGTTGGTTCAATTCCAGTTGCAGTTGGTGGTGGTAGTGGGTTTGGTCATCAGATGGGTGTTTCTCTTCCTTTTGCTCCTGTTTATACTGCTGATCAAATGCAACCTTCTTTGGCTGTGGGAACCTTTGAAAATGTTGGAAGCTACCAGGTTCACCGGCAACCACCACCGCAACAAATGGAACAACAACAACATGTTCCTCTTCACCCTCCTATTGAGGCACAACTGATGTTGTCACTACAACAATCATGGCAACAACCCAATCAGTCTGAAAGTGAGGATGGTAGGAGCGTTGGTCCTTCTTCTTTTTGA 876 0.4863 MSSSNSPCAACKILRRKCKQECIFAPYFQPENSQRFICVHRVFGASNVAKLLKELMVSQRGDAVRSLAYEAEARLRDPVYGCVGFISVLQQRLKQIQTKLENAKKELTTYLSPQAMEYFLANPSALLTKQNNSQGNPFVLFPNYIPPILSGHGGGHLGLMEAQHLAAVATEQKQVIVQQQQQKFMRFETVGSIPVAVGGGSGFGHQMGVSLPFAPVYTADQMQPSLAVGTFENVGSYQVHRQPPPQQMEQQQHVPLHPPIEAQLMLSLQQSWQQPNQSESEDGRSVGPSSF. 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04100 291 Coils Coil 86 106 - -
Seca11g04100 291 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Seca11g04100 291 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Seca11g04100 291 MobiDBLite consensus disorder prediction 268 291 - -
Seca11g04100 291 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04100 Seca-Chr11 113672186 113673061 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04100 1 116 AS2 family AT5G66870 74.138 1.21e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca11g04100 LOB 1.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04100 - - gmx:100796406 241.891