Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04076 ATGGAGGAGGGTAAAAAAACCAAAGGAAAACAAAAGATTGAGATTAAGAAGATTGATAAAGCAAATGATCTTTCTAGTACTTTCGCAAAGCGAAAATATGGCGTTCACAAGAAGGCTTATGAGTTATCAACACTTTGTGGGGCTAGGGTTGATATACTCATGTTTTCTCCATGTGGAAGATCATTCAGTTATGGGGATCCTTCTCTCCGATTGTTGACAAGGACAATTTCAAATGATGAGCACCCTTTAGAAGGTGTCAACTATGATCAACTTGTAGAAGATCACAAGAGATCAGAGATCGATGAACTCAACAGAAAACATGAAGCACATCAAGATCAATTGTATGTTGAGAAAGCACGTGAGAAAAAACTAAAGGACATATTGAAGACAAGGAAAAACGATGGATGGTGGGAGGCCAGAGTGCAAGGTCTTAGTTGTGAACATGCTCAGGAAATTGAAGCAAGTCTTTTAGAATTACATGAAAAATTGTCAAATGAACTTCCAATCAAGTGTGGAGGAAATGCTTCTCATGGTATGGTCTCTTCAACTTAA 552 0.3786 MEEGKKTKGKQKIEIKKIDKANDLSSTFAKRKYGVHKKAYELSTLCGARVDILMFSPCGRSFSYGDPSLRLLTRTISNDEHPLEGVNYDQLVEDHKRSEIDELNRKHEAHQDQLYVEKAREKKLKDILKTRKNDGWWEARVQGLSCEHAQEIEASLLELHEKLSNELPIKCGGNASHGMVSST. 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04076 183 Coils Coil 93 113 - -
Seca11g04076 183 SUPERFAMILY SRF-like 9 70 IPR036879 GO:0003677|GO:0046983
Seca11g04076 183 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Seca11g04076 183 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Seca11g04076 183 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Seca11g04076 183 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Seca11g04076 183 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Seca11g04076 183 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Seca11g04076 183 Gene3D - 21 84 IPR036879 GO:0003677|GO:0046983
Seca11g04076 183 PANTHER MADS BOX PROTEIN 10 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04076 Seca-Chr11 112861269 112861820 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04076 3 176 Type I MADS-box Gene Family AT3G04100 34.615 9.94e-28 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca11g04076 SRF-TF 2.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04076 - K12412 gmx:102665718 168.318