Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04074 ATGGAGGAAGGTAAAAAAACCAAAGGAAAACAAAAGATTGAGATTAAGAAGATTGATAAAGCAAATGATATTTCTAGTACTTTCGCAAAGCGAAAATATGGCGTTCACAAAAAGGCTTATGAGTTATCAGCACTTTGTGGGGCTAGGGTTGATATACTCATGTTTTCTCCATGTGGAAGATCATTCAGTTATGGGGATCCTTCTCTCCGATTGTTGACAAGGACAATTTCAGATGATGAGCACCCTTTAGAAGGTGTCAACTATGATCAACTTGTAGACGATCACAAGAGATCGGAGATCGATGAACTCAACGAAAAACGTGATGCACATCAAGATCAATTGTATGTTGAGAAAGCACGTAAGAAAAAACTAAAGGACATATTGAAGACAAGGAAAAACGATGGCTGGTGGGAGGCCAAAGTGCAAGGTCTTAGTTGGGAACATGCTCAGGAAATTGAAACAAGTCTTTTAGAATTACATGAAAAATTGTCAAATGAACTTCCAATCAAGTGTGGAGGAAATGCTTTTCATGGTATGGTCTCTTCAACTTAA 552 0.3786 MEEGKKTKGKQKIEIKKIDKANDISSTFAKRKYGVHKKAYELSALCGARVDILMFSPCGRSFSYGDPSLRLLTRTISDDEHPLEGVNYDQLVDDHKRSEIDELNEKRDAHQDQLYVEKARKKKLKDILKTRKNDGWWEAKVQGLSWEHAQEIETSLLELHEKLSNELPIKCGGNAFHGMVSST. 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04074 183 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Seca11g04074 183 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Seca11g04074 183 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Seca11g04074 183 Gene3D - 22 82 IPR036879 GO:0003677|GO:0046983
Seca11g04074 183 SUPERFAMILY SRF-like 9 72 IPR036879 GO:0003677|GO:0046983
Seca11g04074 183 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 64 IPR002100 GO:0003677|GO:0046983
Seca11g04074 183 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Seca11g04074 183 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Seca11g04074 183 PANTHER MADS BOX PROTEIN 10 163 - -
Seca11g04074 183 Coils Coil 93 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04074 Seca-Chr11 112557618 112558169 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04074 4 175 Type I MADS-box Gene Family AT3G04100 33.333 2.08e-25 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca11g04074 SRF-TF 6.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04074 - K12412 ccaj:109813207 154.066