Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04070 ATGGAGGAGGGTAAAAAAACCAAAGGAAAACAAAAGATTGAGATTAAGAAGATTGATAAAGCAAATGATCTCTCTAGTACTTTCGCAAAGCGAAAATATGGCGTTCACAAGAAGGCTTATGAGTTATCAACACTTTGTGGGGCTAGGGTTGATATACTCATGTTTTCTCCATGTGGAAGATTATTCAGTTATGGGGATCCTTCTTTCCGATTGTTGACAAGGACAATTTCAGATGATGAGCACGCTTTAGAAGGCGTCAACTATGATCAACTTGTAGAGGATCACAAGAGATCGGAGATCGATGAAATCAACGAAAAACATGATGCACATCAAGATCAATTGTATGTTGAAAAAGCACGTGAGAAAAAACTAAAGGACATATTGATGACAAGGAAAAACGATGGCTGGTGGGAGGCCAAAGTGCAAGGTCTTAGTTGTGAACATGCTCAGGAAATTGAAGCAAGTCTTTTAGAATTCCATGAAAAATTGTCAAATGAACTTCCAATCAAGTGTGGAGGAAATGTTTCTCATGGTATGGTCTCTTCAACTTAA 552 0.3804 MEEGKKTKGKQKIEIKKIDKANDLSSTFAKRKYGVHKKAYELSTLCGARVDILMFSPCGRLFSYGDPSFRLLTRTISDDEHALEGVNYDQLVEDHKRSEIDEINEKHDAHQDQLYVEKAREKKLKDILMTRKNDGWWEAKVQGLSCEHAQEIEASLLEFHEKLSNELPIKCGGNVSHGMVSST. 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04070 183 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Seca11g04070 183 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Seca11g04070 183 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Seca11g04070 183 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Seca11g04070 183 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Seca11g04070 183 SUPERFAMILY SRF-like 9 73 IPR036879 GO:0003677|GO:0046983
Seca11g04070 183 PANTHER MADS BOX PROTEIN 10 163 - -
Seca11g04070 183 Gene3D - 21 85 IPR036879 GO:0003677|GO:0046983
Seca11g04070 183 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04070 Seca-Chr11 112233851 112234402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04070 5 183 Type I MADS-box Gene Family AT5G60440 34.254 6.87e-24 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca11g04070 SRF-TF 3.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04070 - K12412 gmx:102665718 166.777