Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04057 ATGGCTTTCTTTCCAGCAAATTTCATGCTACAAACTTCTCATCAAGATGACCATCAACCTCCACCTTCACTCAACTCAATTATAACCTCATGTGCACCCCAAGAGTACCATGATGCAGGTGGAGGTTCCTTTTTAGGGAAGAGATCTATGTCATTTTCAGGGCTTGAACATGGAGAAGAAGCTAATGCTGAGGAAGAATTGTCTGATGATGGATCACAGGCAGGGGAGAAGAAGAGGAGGCTTAATATGGAACAAGTGAAGACACTTGAGAAGAGCTTTGAGTTAGGAAACAAGCTTGAACCTGAGAGGAAAATGCAGCTGGCAAGGGCTCTTGGTTTGCAGCCTAGACAGATTGCTATATGGTTCCAGAACAGAAGGGCTAGATGGAAGACCAAGCAATTGGAGAAGGACTATGATCTTCTTAAAAGACAATATGAAGCTGTCAAGGCAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGACAGAGATTTTGGCACTGAAAAGTAGAGAACCAACTGAATCTATCAACCTCAATAAAGAAACAGAGGGATCCAGCAGCAATAGGAGTGAGAATAGCTCAGACATTAAGTTGGATATCTCAAGGACACCAGCTATTGACAGTCCTTTATCTACTCAGCAGACTAGCAGAACCCTCTTTCCACCCTCTGCTAGACCAACAGGAGTGGCTCAGCTTTTCCAAACTACTTCAAGGCCAGACCTTCAGTGCCAAAAGATTGATCATATGGTCAAAGAAGAGAGCTTAAGCAACATGTTTTGTGGCATTGATGATCAATCTGCAGCAGGGCTATGGCCATGGTTGGAACACCAACATTTCAATTGA 849 0.4323 MAFFPANFMLQTSHQDDHQPPPSLNSIITSCAPQEYHDAGGGSFLGKRSMSFSGLEHGEEANAEEELSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADNDALQAQNQKLQTEILALKSREPTESINLNKETEGSSSNRSENSSDIKLDISRTPAIDSPLSTQQTSRTLFPPSARPTGVAQLFQTTSRPDLQCQKIDHMVKEESLSNMFCGIDDQSAAGLWPWLEHQHFN. 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04057 282 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 51 212 IPR045224 GO:0003700
Seca11g04057 282 ProSitePatterns 'Homeobox' domain signature. 107 130 IPR017970 GO:0000981|GO:0006355
Seca11g04057 282 Pfam Homeobox associated leucine zipper 132 172 IPR003106 GO:0006355|GO:0043565
Seca11g04057 282 MobiDBLite consensus disorder prediction 180 227 - -
Seca11g04057 282 MobiDBLite consensus disorder prediction 177 227 - -
Seca11g04057 282 SUPERFAMILY Homeodomain-like 70 134 IPR009057 -
Seca11g04057 282 MobiDBLite consensus disorder prediction 55 82 - -
Seca11g04057 282 SMART HOX_1 75 136 IPR001356 GO:0003677
Seca11g04057 282 Pfam Homeodomain 77 130 IPR001356 GO:0003677
Seca11g04057 282 FunFam Homeobox-leucine zipper protein ATHB-13 69 136 - -
Seca11g04057 282 ProSiteProfiles 'Homeobox' domain profile. 72 132 IPR001356 GO:0003677
Seca11g04057 282 Coils Coil 124 172 - -
Seca11g04057 282 CDD homeodomain 77 133 IPR001356 GO:0003677
Seca11g04057 282 Gene3D - 69 138 - -
Seca11g04057 282 PRINTS Lambda-repressor HTH signature 103 112 IPR000047 GO:0003677
Seca11g04057 282 PRINTS Lambda-repressor HTH signature 112 128 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04057 Seca-Chr11 110884933 110887951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04057 1 282 Homeobox Transcription Factor Family AT1G69780 62.542 2.98e-114 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca11g04057 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04057 K09338 - gmx:100801479 504.597