Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04056 ATGCAAGATATGAAGAAGCAGAAGCAGCAGTGCAGTGAAGATTCTAAGAAGAAGGAGCGTCACATTGTCACTTGGACTCAAGAGGAGGATGATATACTTAGAGAGCAGATTGGTATTCATGGAACTGAGAATTGGGCAATTATTGCATCTAAATTCAAGGACAAAACGACAAGACAGTGCAGAAGAAGATGGTACACTTACTTGAATTCGGATTTCAAGAAAGGTGGATGGTCACCGGAGGAAGACATGCTGTTATGTGAGGCTCAAAAAATATTTGGGAACAGATGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAATGCTGTGAAAAACCGTTTCTCCACACTATGCAGAAAGAGAGAAAAATATGCAGCTTTAGCAAAAGAAAATAGCATTTCATACATTAATTCAAATAACAAGAGGATTATTTCTCAACATGGTTGTAATACAGATGCAACACCAGAATCTGCAGTACCAGTTAAGAAGATGAGGAGAGCCCATATCCCTGATGATGCTAAAAAGATAAACTTTGGAGACAGATCACATTTGCGAAATGGAACTCCAATAAATCAACAGCCAAGAGCACCATTTGCTGTATTAGCTCAGAACTCCCCTAATGTAAACAACTTGTTAGACCAACAACATGTTTGCGATGCCAAGTTTAACGGTTCCGCTCAAAATAACAAAATTCAAGGAACATTCCTCAAAAAGGATGACCCAAAGATAAGTGCATTGATGGAACAGGCAGAGTTACTAAGTTCACTAGCTCTAAAAGTTGATACAGAGAACATGGACCAAAGTCTTGAAAATGCATGGAAGGTTCTTCAAGAGTTTCTGAACCGTACCAAAGAATCAGATATCCATAGACATAAGATTCCAGATTTACTGCTTGTAGATCTGAAAGATATGGTTGAGGACTTGAAGACTAGTAATGAGGGAGGTCGTTCCTGTTGGAGGAAACTGGAAATATATGAAGACTCTCCAGGCAGCTCTGAATACAGTACAGGATCAACTCTTCTGCCTCAGTCAGCTGGTGATAATTTGGAACACTCATTGCATCAGGATATTGGAACTGAAATGAAGGCTACACAATTTGGAGATAAAAGAGAATTAAGTGGTGATGAGAAAGGGGTTCTTTCTACTGCAAATGTGGATCAAGATATTTGTGAGGAACAGATAAACAATGATGGCGTTGTTTCTGCCTCATCAAGATTGGAGTTCAGTTCCCCTCTTCAAGCAACCCCTATTTTCAGATCCTTGGCTGCAGGAATTCCCAGCCCACAATTTTCAGAAAGTGAAAGGAACTTCCTAAGGAAAACACTAGGAGTGGAGTCTCCATCCTTCAATCCAAGTGCCAACCCGTCCCAACCGCCACCCTGCAAAAGAGCCCTGCTAAATAGTCTATGA 1413 0.4062 MQDMKKQKQQCSEDSKKKERHIVTWTQEEDDILREQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCRKREKYAALAKENSISYINSNNKRIISQHGCNTDATPESAVPVKKMRRAHIPDDAKKINFGDRSHLRNGTPINQQPRAPFAVLAQNSPNVNNLLDQQHVCDAKFNGSAQNNKIQGTFLKKDDPKISALMEQAELLSSLALKVDTENMDQSLENAWKVLQEFLNRTKESDIHRHKIPDLLLVDLKDMVEDLKTSNEGGRSCWRKLEIYEDSPGSSEYSTGSTLLPQSAGDNLEHSLHQDIGTEMKATQFGDKRELSGDEKGVLSTANVDQDICEEQINNDGVVSASSRLEFSSPLQATPIFRSLAAGIPSPQFSESERNFLRKTLGVESPSFNPSANPSQPPPCKRALLNSL. 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04056 470 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Seca11g04056 470 FunFam Transcription factor MYB124 17 73 - -
Seca11g04056 470 MobiDBLite consensus disorder prediction 1 20 - -
Seca11g04056 470 Pfam Myb-like DNA-binding domain 25 85 - -
Seca11g04056 470 CDD SANT 77 118 IPR001005 -
Seca11g04056 470 PANTHER MYB PROTEIN-RELATED 24 169 - -
Seca11g04056 470 Gene3D - 76 147 - -
Seca11g04056 470 SMART sant 21 70 IPR001005 -
Seca11g04056 470 SMART sant 73 121 IPR001005 -
Seca11g04056 470 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 123 IPR017930 -
Seca11g04056 470 CDD SANT 24 68 IPR001005 -
Seca11g04056 470 ProSiteProfiles Myb-like domain profile. 25 68 IPR001005 -
Seca11g04056 470 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 72 IPR017930 -
Seca11g04056 470 Gene3D - 13 73 - -
Seca11g04056 470 SUPERFAMILY Homeodomain-like 21 115 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04056 Seca-Chr11 110817728 110824366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04056 12 321 MYB Transcription Factor Family AT2G02820 61.783 9.30e-138 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca11g04056 Myb_DNA-bind_6 8.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04056 K09422 - gmx:100807667 737.258