Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04053 ATGGGTAACTGCCTAGATTCTTCAGCAAAAGTAGATTCAGGTCACAGTGCCAGTCCCAGTCCCAGAACCCCTTCTGGAATTTCAAAAACTAGTACTTCATCTGTTCCTTCCAGTTTATCTATTCTGTCTCACAGTGGAAGAAGTGATGTCTCAAGTCTTCCCACACCAAGGTCTGAGGGTGAAATCTTGTCTTCTCCAAATCTTAAGGCCTTTCCATTCAATGAGCTAAAGAATGCCACCAGAAACTTTCGACCTGACAGTCTTCTTGGTGAAGGAGGATTTGGTTATGTTTATAAGGGATGGATTGATGAACACACATTTACAGCTACAAAACCTGGATCAGGAATGGTTGTTGCTGTGAAGAAACTCAAGCCTGAAGGTTTACAAGGTCATAAGGAGTGGTTGACTGAAGTTGATTACCTTGGGCAACTTCACCATGAAAATTTGGTTAAATTGATTGGATACTGTGTGGAGGGAGAGAACAGGATGCTGGTCTATGAGTTTATGCCCAAAGGGAGCTTAGAGAATCATCTGTTTAGAAGAGGACCACAACCTCTGTCTTGGTCAGTGAGGATGAAAGTGGCCATTGGTGCAGCCAGAGGACTCTCTTTCCTTCATAATGCCAAATCACAAGTCATATACCGTGATTTTAAAGCATCAAATATCCTGCTAGATGCAGATTTCAATGCTAAACTCTCTGATTTTGGCTTAGCAAAAGCTGGTCCTACGGGAGATAGAACTCATGTCTCTACTCAAGTCATGGGTACTCAGGGATATGCAGCACCTGAATATGTCGCAACAGGTCGACTAACAGCCAAAAGTGATGTATACAGCTTTGGGGTTGTGTTGCTTGAACTTCTGTCAGGTAGACGTGCTGTTGATAGAACAAAAGCTGGTATTGAGCAAAATCTGGTAGACTGGGCAAAACCATATTTGGGTGACAAAAGAAAACTATTTAGGATTATGGACACAAAGTTGGAGGGTCAATACCCACAAAAAGGAGCCTACATGGCTGCAAATCTTGCTCTACAATGCCTTAATCGTGAATCCAAGGCAAGGCCTCCAATGACAGAGGTTTTAGCAACTCTAGAACAGATTGAAGTTTCCAAAAATGCAGGGCGATACTCCCAATCAGAACACAAGAGAGTCCATGTAAGAAAGTTTCCTGCACAAAATCGGTCCCCTTTAAATGTTACTCCAACTAAACTCCCATTGCCATCTCACCGACCATCTGCTCTTGTACACTAA 1248 0.4279 MGNCLDSSAKVDSGHSASPSPRTPSGISKTSTSSVPSSLSILSHSGRSDVSSLPTPRSEGEILSSPNLKAFPFNELKNATRNFRPDSLLGEGGFGYVYKGWIDEHTFTATKPGSGMVVAVKKLKPEGLQGHKEWLTEVDYLGQLHHENLVKLIGYCVEGENRMLVYEFMPKGSLENHLFRRGPQPLSWSVRMKVAIGAARGLSFLHNAKSQVIYRDFKASNILLDADFNAKLSDFGLAKAGPTGDRTHVSTQVMGTQGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDRTKAGIEQNLVDWAKPYLGDKRKLFRIMDTKLEGQYPQKGAYMAANLALQCLNRESKARPPMTEVLATLEQIEVSKNAGRYSQSEHKRVHVRKFPAQNRSPLNVTPTKLPLPSHRPSALVH. 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04053 415 MobiDBLite consensus disorder prediction 9 62 - -
Seca11g04053 415 SUPERFAMILY Protein kinase-like (PK-like) 55 363 IPR011009 -
Seca11g04053 415 Gene3D Transferase(Phosphotransferase) domain 1 169 391 - -
Seca11g04053 415 PANTHER OS01G0588500 PROTEIN-RELATED 38 367 - -
Seca11g04053 415 Gene3D Phosphorylase Kinase; domain 1 59 168 - -
Seca11g04053 415 MobiDBLite consensus disorder prediction 1 64 - -
Seca11g04053 415 ProSitePatterns Protein kinases ATP-binding region signature. 89 122 IPR017441 GO:0005524
Seca11g04053 415 MobiDBLite consensus disorder prediction 372 415 - -
Seca11g04053 415 CDD STKc_IRAK 89 366 - -
Seca11g04053 415 ProSiteProfiles Protein kinase domain profile. 83 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g04053 415 FunFam Probable serine/threonine-protein kinase PBL8 169 383 - -
Seca11g04053 415 FunFam Serine/threonine-protein kinase BIK1 50 168 - -
Seca11g04053 415 Pfam Protein tyrosine and serine/threonine kinase 87 362 IPR001245 GO:0004672|GO:0006468
Seca11g04053 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04053 Seca-Chr11 110779122 110782087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04053 61 363 Glycoside Hydrolase AT3G07070 52.941 1.43e-111 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca11g04053 PK_Tyr_Ser-Thr 6.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04053 - - gmx:100809778 684.1