Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04036 ATGCAGGATGAAAACCTTGAATTAGCTAAGGGGCAAATGGAAGAGACTAGAGAAGAAAACGAGAGGTTGAATGTAAAGGATCACCAAATGTTGCAAATGAACTTCTTTAACATCCTTCAACAAGAAGATCAGGCAACCAAAGTTACAGGTACAAGTGAAGAAAATGAAGAAAGTGAACTTGTGTCCCTTTCTCTAGGGATTTCATCCAAAGTCCAACCTATCATGGATGAGAAAAAGAATAGCCATAGAACTGGAAAGGCCAGAGAAGATGGACTTGCACTTGGGTTAGATATCAAATTTGACCCTTCTGCTGAAGCTGAAACTACAAAACATTCCCACCCTGAAAGTGGCTTTGATGAGGAACTTGCTAAGATATGGCCACCTAGTAAAGTTCCTAAGACAACAAGAAATGAGGATAAAAGTGAAGCTTCTCAGCTCAAGAAAGCTAGGGTTTGTATCAGAGCCAGATGTGACACACAAACGATGAATGATGGGTGCCAATGGAGAAAATATGGGCAGAAAATGGCAAAAGGAAATCCGTGTCCCCGAGCATACTATCGATGCACTGTCTCTCCATCTTGTCCTGTGAGAAAACAGGTTCAAAGATGTGCTGATGACATTTCAATCTTGATTACCACCTATGAAGGAACCCACAACCATCCATTGCCCACTTCAGCCACTGCCATAGCCTACACAACTTCAGCAGCTGCTTCCATGCTTCAATCTCCCTCATTGACCTCACAACAAGGACCAGTATCCAATTACAACCTTAATGCACCAAACTTCACATCAACCTGTAGCCAGCAGTTTTCAACACCACAACCATTACACTTCCACAATTCAACCTCCAATTCTCACCCCACAGTCACTTTTGATCTCACTAGTACTACACCTCATATTGGAAAATTCACTCCAGCCATACCAAAATATTCATCAACAAACCTTAACTTTTCCTCAACCATCACCACCCCTTTACAATCTAGTATGCTACACCCATCATCATCATCATCAGCTAATTGGAGCCCTTATAGTGAGTACTTTAACTACTATGGGGGACTCATCACCCAAAATAGAAACCAATATGGTTCCCTTATGAACAATGGAAAACAGCCATTTCAAGGACATAATTACTACATGAGCAACAACCATGGCATTTCTCAACAATTACCAGATTCCATTGCAGCCACAACCAAGGCTATCACAGCCAACCCAAAATTTCAATCTGCACTAGCAACTGCTCTCACAACTTATGTTACTAATAATGGATCTGCTTGTGGTGGGGTAAGAGAAAATCATCATGTTGTGGACCAGAATGCAGATTTGAACTTGAAGCTAGGTGGAGATCATATGCTATACACAAAGAACACAGTTTACACTTCTACTTCTAACCAGAATAATGGCATAGCATCATGTGCATCATCAAGGTACATGAGTATTTCACCCTCTGCTCCTAATACTCAGAAAGGAAACATGGTCATATTTCCACCGCCACAAGCATCTAAAAGTTCCTTTGGATCGCTTTCTAATAAAAGTAACCAGTTCCTAGAGGAAGGGAAGTGA 1560 0.4122 MQDENLELAKGQMEETREENERLNVKDHQMLQMNFFNILQQEDQATKVTGTSEENEESELVSLSLGISSKVQPIMDEKKNSHRTGKAREDGLALGLDIKFDPSAEAETTKHSHPESGFDEELAKIWPPSKVPKTTRNEDKSEASQLKKARVCIRARCDTQTMNDGCQWRKYGQKMAKGNPCPRAYYRCTVSPSCPVRKQVQRCADDISILITTYEGTHNHPLPTSATAIAYTTSAAASMLQSPSLTSQQGPVSNYNLNAPNFTSTCSQQFSTPQPLHFHNSTSNSHPTVTFDLTSTTPHIGKFTPAIPKYSSTNLNFSSTITTPLQSSMLHPSSSSSANWSPYSEYFNYYGGLITQNRNQYGSLMNNGKQPFQGHNYYMSNNHGISQQLPDSIAATTKAITANPKFQSALATALTTYVTNNGSACGGVRENHHVVDQNADLNLKLGGDHMLYTKNTVYTSTSNQNNGIASCASSRYMSISPSAPNTQKGNMVIFPPPQASKSSFGSLSNKSNQFLEEGK. 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04036 519 FunFam probable WRKY transcription factor 31 147 224 - -
Seca11g04036 519 Pfam WRKY DNA -binding domain 163 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca11g04036 519 SMART WRKY_cls 162 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca11g04036 519 ProSiteProfiles WRKY domain profile. 157 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca11g04036 519 Gene3D WRKY domain 147 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca11g04036 519 SUPERFAMILY WRKY DNA-binding domain 155 223 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca11g04036 519 MobiDBLite consensus disorder prediction 1 23 - -
Seca11g04036 519 MobiDBLite consensus disorder prediction 496 519 - -
Seca11g04036 519 Coils Coil 6 26 - -
Seca11g04036 519 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 5 426 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04036 Seca-Chr11 110125789 110128055 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04036 6 440 WRKY Transcription Factor Family AT1G18860 36.546 3.03e-65 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca11g04036 WRKY 3.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04036 - - gmx:102666229 503.442