Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04034 ATGTTGCATTTGCAGTTGCAGCTACACTCACCACCAGCTTCATCTCCTTCTTATTCTTCGCTTAAGCTTTCCCCAAACCACTCTTTCTCTCCAAAGTTTTTTCCTTTCAACCCTTCTCCTAAACCCCTCACCCTCACCCAACCAATTAGGTGCCGCCACTCAGAGCTCTTCGACAACAAAACCTTCGCCTCCACACCACAACCCGCAAGCCCCAATCCTTCAGTTGGAGGTTTGCCACCTAGGGTTTATGTTGGTCACTCCATTTACAAAGGGAAGGCTGCGCTCACAGTGACTCCTAGACCACCGGAATTCACGCCACTGGAATCAGGGGCATTCAAGATATCTAGGGAAGGTTATGTGCTGCTTCAGTTTGCGCCAGCTGTTGGTTCACGTCAATATGATTGGAACAGAAAGCAGGTGTTCTCATTATCAGTGAATGAAATGGGAAGTGTGATGAGCCTTGGTGCAAGGGAGTCTTGTGAATTTTTTCATGATCCTTTGAAGGGCAAAAGTGATGAAGGTAAAGTGAGAAAAGTTTTGAAGGTGGAGCCTCTTCCAGATGGTTCTGGTCACTTCTTTAACCTCAGTGTTCAAAACAAGATTGTGAACATGGATGAAAGCATCTATATCCCTGTTACAAAATCCGAGTTAGCAGTTTTGAACTCACTTTTCAATGTATAA 681 0.4508 MLHLQLQLHSPPASSPSYSSLKLSPNHSFSPKFFPFNPSPKPLTLTQPIRCRHSELFDNKTFASTPQPASPNPSVGGLPPRVYVGHSIYKGKAALTVTPRPPEFTPLESGAFKISREGYVLLQFAPAVGSRQYDWNRKQVFSLSVNEMGSVMSLGARESCEFFHDPLKGKSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKIVNMDESIYIPVTKSELAVLNSLFNV. 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04034 226 MobiDBLite consensus disorder prediction 1 21 - -
Seca11g04034 226 SUPERFAMILY ssDNA-binding transcriptional regulator domain 80 225 IPR009044 GO:0003677|GO:0006355
Seca11g04034 226 Gene3D Transcriptional Coactivator Pc4; Chain A 74 226 IPR009044 GO:0003677|GO:0006355
Seca11g04034 226 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 59 225 IPR013742 GO:0003697|GO:0006355|GO:0006952
Seca11g04034 226 Pfam Whirly transcription factor 88 222 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04034 Seca-Chr11 110014626 110017956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04034 34 225 Whirly Transcription Factor Family AT1G14410 66.146 4.36e-90 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Seca11g04034 Whirly 1.4e-61 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04034 K26559 - gmx:100804480 329.717