Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04032 ATGAAGATTATCCACCAGGATCCCATGCTTGAGGCACAGCGAGTGGCTGCTATTAAGAAAGCCAAGGGAACTGTTGCAGCAAGAGAGCATACTTCCAAAACTATGAAAGCTTTCTTTAGTGATCCAATAAACCGTCTGAAAAGGAGCATGGCCATGAAGGGAGTGAAATTCTACTGCCAAAACTGTGGACGTGAAGGGCATAGGAGACACTACTGTCCAGAACTCCAGGATAGTTTGATTGATCGGCAATTCACATGTAGTGTATGTGGGGAAAAAGGCCACAACAAAAGAACATGTAGAAAGTTAAGGATAAGCCATAGCAATGGGAGAGTTGTACAACACCATCGGTGTAAAATATGTCGCCAATATGGCCATAACCGCAGGACATGCCCTCAAGTTGTTTCTAATAAAAGAAGGGACATGGCCTCTCGAAGAGCATACAAGTGTCAGTTGTGCCAGAAAGAGGGACACAATATTAGGACATGTCCTAGTAGAAGAGTTGTTACTGAACATCCTCAAGAGTAA 525 0.4362 MKIIHQDPMLEAQRVAAIKKAKGTVAAREHTSKTMKAFFSDPINRLKRSMAMKGVKFYCQNCGREGHRRHYCPELQDSLIDRQFTCSVCGEKGHNKRTCRKLRISHSNGRVVQHHRCKICRQYGHNRRTCPQVVSNKRRDMASRRAYKCQLCQKEGHNIRTCPSRRVVTEHPQE. 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04032 174 SUPERFAMILY Retrovirus zinc finger-like domains 109 166 IPR036875 GO:0003676|GO:0008270
Seca11g04032 174 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 2 100 - -
Seca11g04032 174 Gene3D - 110 173 - -
Seca11g04032 174 ProSiteProfiles Zinc finger CCHC-type profile. 86 101 IPR001878 GO:0003676|GO:0008270
Seca11g04032 174 SMART c2hcfinal6 116 132 IPR001878 GO:0003676|GO:0008270
Seca11g04032 174 SMART c2hcfinal6 148 164 IPR001878 GO:0003676|GO:0008270
Seca11g04032 174 SMART c2hcfinal6 58 74 IPR001878 GO:0003676|GO:0008270
Seca11g04032 174 SMART c2hcfinal6 85 101 IPR001878 GO:0003676|GO:0008270
Seca11g04032 174 Pfam Zinc knuckle 147 163 IPR025829 -
Seca11g04032 174 ProSiteProfiles Zinc finger CCHC-type profile. 59 74 IPR001878 GO:0003676|GO:0008270
Seca11g04032 174 Gene3D - 48 103 - -
Seca11g04032 174 SUPERFAMILY Retrovirus zinc finger-like domains 56 102 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04032 Seca-Chr11 109872978 109874680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04032 1 167 C2H2 Transcription Factor Family AT5G20220 57.143 4.12e-64 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04032 - - gmx:100800156 308.916