LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g04031	ATGGAGCTTTCCCCTGCTGTGAAGTCTGAACTAAGCCCAAGAAGTCATAGGTTGCTCATGATAGATAGTGAGGCTATTCCTACTAAATGTGTTAAAAGGAGGCGAAGAGATTCATCATCTATTACAGTGTTAGGGGCCAATGAAAAACAAGGTGAACAGTCAGAAGAACAGCAGCCACTTGGTGGCCAATCAACTGCCACCACTGTGAAGAGAAGCTCAAGGTTCAGGGGTGTTAGCAGGCATGTCATATTCATAAACATCTTAGTGCATAGGTGGACTGGAAGGTTTGAAGCCCATCTATGGGATAAAGGGACCTGGAATCCCACTCAGAAGAAGAAAGGAAAACAAGGAGCTTATAATGATGAAGAAGCTGCTGCTAGAGCTTATGATTTGGCTGCACTCAAGTACTGGGGAACATCAACTTTCACAAATTTCCCTGTATCTGATTATGAGAAAGAAATTGAGATAATGAAAACTGTAACCAAAGAAGAATATCTTGCTTCATTAAGAAGGAGGAGCAGTGGTTTCTCCAGAGGTGTATCAAAGTATAGAGGAGTAGCAAGGCATCATCACAATGGAAGATGGGAAGCAAGGATTGGGAGAGTGTTTGGCAACAAGTACCTCTATCTTGGGACTTACAGCACACAAGAAGAGGCAGCTCGCGCATATGATATTGCAGCAATTGAATACAGAGGCATAAATGCAGTCACAAACTTTGACTTGAGCACCTACATCAGATGGCTAAGACCAGGAGCACATTCTAATGCTTCTCAAGGGAAAAAGACAAGCACAGACCCTCAACACTTTGCAACCTCTAACTCCATCCAGATAAGAGGAAACACTGAGGTATCCAACTCCAACATCCCTCCATTCCATGCAGGTGAATTGGGCAGTACCAAGAAGCAAGACTTTTCCTTTATGACCCCTTTAAGTCCTTGCAATAAGTCATCTTCCCCAACTGCATTAGGGCTTCTCCTGAAATCCTCAGTGTTTAGAGAACTGATGCAGAGAAATCTGAACTCTTCTAATGTAGAAGCTGAAGAAGTTGAATTGAAATATCCACAAGACTGCAGTGATGGGATTGGAGGAATTTTTTATAATGACAACACCAGTAACCCATACTTGTGCTCTTCCAATATCAATAGATTATCCAACTTGGAGTCATCAGAAGAAAGCCAATTGCCAATGTATCATGGAACTATGCAATCCCTATGGAATGGTGCTTTCAACATGACTAACTGA	1242	0.4227	MELSPAVKSELSPRSHRLLMIDSEAIPTKCVKRRRRDSSSITVLGANEKQGEQSEEQQPLGGQSTATTVKRSSRFRGVSRHVIFINILVHRWTGRFEAHLWDKGTWNPTQKKKGKQGAYNDEEAAARAYDLAALKYWGTSTFTNFPVSDYEKEIEIMKTVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPGAHSNASQGKKTSTDPQHFATSNSIQIRGNTEVSNSNIPPFHAGELGSTKKQDFSFMTPLSPCNKSSSPTALGLLLKSSVFRELMQRNLNSSNVEAEEVELKYPQDCSDGIGGIFYNDNTSNPYLCSSNINRLSNLESSEESQLPMYHGTMQSLWNGAFNMTN.	414

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Seca11g04031	413	SMART	rav1_2	74	152	IPR001471	GO:0003700\|GO:0006355
Seca11g04031	413	SMART	rav1_2	182	246	IPR001471	GO:0003700\|GO:0006355
Seca11g04031	413	ProSiteProfiles	AP2/ERF domain profile.	74	146	IPR001471	GO:0003700\|GO:0006355
Seca11g04031	413	ProSiteProfiles	AP2/ERF domain profile.	182	240	IPR001471	GO:0003700\|GO:0006355
Seca11g04031	413	MobiDBLite	consensus disorder prediction	40	68	-	-
Seca11g04031	413	Pfam	AP2 domain	181	232	IPR001471	GO:0003700\|GO:0006355
Seca11g04031	413	CDD	AP2	181	242	IPR001471	GO:0003700\|GO:0006355
Seca11g04031	413	Gene3D	AP2/ERF domain	181	242	IPR036955	GO:0003700\|GO:0006355
Seca11g04031	413	Gene3D	AP2/ERF domain	73	148	IPR036955	GO:0003700\|GO:0006355
Seca11g04031	413	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	49	304	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g04031	Seca-Chr11	109512848	109515342	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g04031	56	244	AP2-EREBP Transcription Factor Family	AT5G57390	60.938	2.41e-76	242

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Seca11g04031		AP2	8.7e-12	CL0081

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g04031	-		-	gmx:100799621	647.121

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