Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04031 ATGGAGCTTTCCCCTGCTGTGAAGTCTGAACTAAGCCCAAGAAGTCATAGGTTGCTCATGATAGATAGTGAGGCTATTCCTACTAAATGTGTTAAAAGGAGGCGAAGAGATTCATCATCTATTACAGTGTTAGGGGCCAATGAAAAACAAGGTGAACAGTCAGAAGAACAGCAGCCACTTGGTGGCCAATCAACTGCCACCACTGTGAAGAGAAGCTCAAGGTTCAGGGGTGTTAGCAGGCATGTCATATTCATAAACATCTTAGTGCATAGGTGGACTGGAAGGTTTGAAGCCCATCTATGGGATAAAGGGACCTGGAATCCCACTCAGAAGAAGAAAGGAAAACAAGGAGCTTATAATGATGAAGAAGCTGCTGCTAGAGCTTATGATTTGGCTGCACTCAAGTACTGGGGAACATCAACTTTCACAAATTTCCCTGTATCTGATTATGAGAAAGAAATTGAGATAATGAAAACTGTAACCAAAGAAGAATATCTTGCTTCATTAAGAAGGAGGAGCAGTGGTTTCTCCAGAGGTGTATCAAAGTATAGAGGAGTAGCAAGGCATCATCACAATGGAAGATGGGAAGCAAGGATTGGGAGAGTGTTTGGCAACAAGTACCTCTATCTTGGGACTTACAGCACACAAGAAGAGGCAGCTCGCGCATATGATATTGCAGCAATTGAATACAGAGGCATAAATGCAGTCACAAACTTTGACTTGAGCACCTACATCAGATGGCTAAGACCAGGAGCACATTCTAATGCTTCTCAAGGGAAAAAGACAAGCACAGACCCTCAACACTTTGCAACCTCTAACTCCATCCAGATAAGAGGAAACACTGAGGTATCCAACTCCAACATCCCTCCATTCCATGCAGGTGAATTGGGCAGTACCAAGAAGCAAGACTTTTCCTTTATGACCCCTTTAAGTCCTTGCAATAAGTCATCTTCCCCAACTGCATTAGGGCTTCTCCTGAAATCCTCAGTGTTTAGAGAACTGATGCAGAGAAATCTGAACTCTTCTAATGTAGAAGCTGAAGAAGTTGAATTGAAATATCCACAAGACTGCAGTGATGGGATTGGAGGAATTTTTTATAATGACAACACCAGTAACCCATACTTGTGCTCTTCCAATATCAATAGATTATCCAACTTGGAGTCATCAGAAGAAAGCCAATTGCCAATGTATCATGGAACTATGCAATCCCTATGGAATGGTGCTTTCAACATGACTAACTGA 1242 0.4227 MELSPAVKSELSPRSHRLLMIDSEAIPTKCVKRRRRDSSSITVLGANEKQGEQSEEQQPLGGQSTATTVKRSSRFRGVSRHVIFINILVHRWTGRFEAHLWDKGTWNPTQKKKGKQGAYNDEEAAARAYDLAALKYWGTSTFTNFPVSDYEKEIEIMKTVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPGAHSNASQGKKTSTDPQHFATSNSIQIRGNTEVSNSNIPPFHAGELGSTKKQDFSFMTPLSPCNKSSSPTALGLLLKSSVFRELMQRNLNSSNVEAEEVELKYPQDCSDGIGGIFYNDNTSNPYLCSSNINRLSNLESSEESQLPMYHGTMQSLWNGAFNMTN. 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04031 413 SMART rav1_2 74 152 IPR001471 GO:0003700|GO:0006355
Seca11g04031 413 SMART rav1_2 182 246 IPR001471 GO:0003700|GO:0006355
Seca11g04031 413 ProSiteProfiles AP2/ERF domain profile. 74 146 IPR001471 GO:0003700|GO:0006355
Seca11g04031 413 ProSiteProfiles AP2/ERF domain profile. 182 240 IPR001471 GO:0003700|GO:0006355
Seca11g04031 413 MobiDBLite consensus disorder prediction 40 68 - -
Seca11g04031 413 Pfam AP2 domain 181 232 IPR001471 GO:0003700|GO:0006355
Seca11g04031 413 CDD AP2 181 242 IPR001471 GO:0003700|GO:0006355
Seca11g04031 413 Gene3D AP2/ERF domain 181 242 IPR036955 GO:0003700|GO:0006355
Seca11g04031 413 Gene3D AP2/ERF domain 73 148 IPR036955 GO:0003700|GO:0006355
Seca11g04031 413 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 49 304 - -
Seca11g04031 413 Coils Coil 332 352 - -
Seca11g04031 413 FunFam AP2-like ethylene-responsive transcription factor 181 242 - -
Seca11g04031 413 MobiDBLite consensus disorder prediction 30 68 - -
Seca11g04031 413 SUPERFAMILY DNA-binding domain 86 148 IPR016177 GO:0003677
Seca11g04031 413 SUPERFAMILY DNA-binding domain 181 242 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04031 Seca-Chr11 109512848 109515342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04031 56 244 AP2-EREBP Transcription Factor Family AT5G57390 60.938 2.41e-76 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca11g04031 AP2 8.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04031 - - gmx:100799621 647.121