Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04023 ATGGAAGGCAATAAGAGCTCGGAGCAGAGCAACAATCCAGATGACTTGTGGTCGCCGATTAGGGACATCGACCGGAACCCGGCGCCGGTGAACCAGTTGGTTGGTAGCAATGAAGGGAATGTGGACACGGCGCCGGTGAACAAGTTGGTAGGTAGCAATGAAGGGAACATGAACACGGCGCCGGTGAACAAGTTGGTAGGTAACAATGAAGGGGACATGGACACGGGGACGACGGAGCCGGAGCAGCCGCCGAGGAAGAAGCCAGGGGACATGGCCACGGGGACGGCGGAGCCGAAGCAGCCGCCGAGGAGGAAGCCAGGGAGGCCCAGGAAGTACCCAGAGGAAGGTTCCGCCTCTAGGAAAGCTACTGTTACTCATAATAGTAACGAAAAGAAAGGTGCAGGTAACGAAAAGAGAGACTTCGTTCCATATATTCTTACTGTTGGAGATGGTGAGGATATTCTCCAAAAAATTATGTCGTTCGTTAAAGGAACAAGGCGTCAGGTTAGCGTTATGTCAGCATCTGGCTCCGTCTCTTGTGCTACTCTTGGTAAGCCAGCACCAGGGCCTTCAGGAACCATCAATGTTGCATATGGGGGTCTGTATTACATTACTTCGCTTACTGGTTGCTATGTCAGTCAAGACCGTGGAAGTCGACGCACTGGTAGGTTCACTGCAACCTTATCTAATTCTGATGGGCATAGCATTGGTGGAATCCTTGCTGGACCCCTTAAAGCTGCTGGTTCAGTTGTGGTCGTTGCTGGTACATTTAAGAAGCCCAAGTATGTAGAAATAAAAGGTGAAGCTTCTACACAACCAGTTGCAGCAGCAGTTGCTACACCAGAAACAAGTTTAGCTTTAGCTTTGCGCCCACAAGTTGGCTCTTCCAGTGGGAATCCAGTGCTGGAAATTGATGAAGAGACACCTTCCCCTCCCCCTCCCTTGGGCAGGGGAAGTGCTGGCTTTGAACTGACAGGAATAACAGATCGTGGAAAACAACAGGCTCTTGAGGAGGAGGACCCTGAAGAGGACCCTGATCAAAGTTCTGATTGA 1053 0.5109 MEGNKSSEQSNNPDDLWSPIRDIDRNPAPVNQLVGSNEGNVDTAPVNKLVGSNEGNMNTAPVNKLVGNNEGDMDTGTTEPEQPPRKKPGDMATGTAEPKQPPRRKPGRPRKYPEEGSASRKATVTHNSNEKKGAGNEKRDFVPYILTVGDGEDILQKIMSFVKGTRRQVSVMSASGSVSCATLGKPAPGPSGTINVAYGGLYYITSLTGCYVSQDRGSRRTGRFTATLSNSDGHSIGGILAGPLKAAGSVVVVAGTFKKPKYVEIKGEASTQPVAAAVATPETSLALALRPQVGSSSGNPVLEIDEETPSPPPPLGRGSAGFELTGITDRGKQQALEEEDPEEDPDQSSD. 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04023 350 MobiDBLite consensus disorder prediction 101 117 - -
Seca11g04023 350 ProSiteProfiles PPC domain profile profile. 138 282 IPR005175 -
Seca11g04023 350 SUPERFAMILY AF0104/ALDC/Ptd012-like 141 265 - -
Seca11g04023 350 CDD DUF296 143 257 IPR005175 -
Seca11g04023 350 MobiDBLite consensus disorder prediction 1 16 - -
Seca11g04023 350 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 80 284 IPR039605 GO:0003680
Seca11g04023 350 Pfam Plants and Prokaryotes Conserved (PCC) domain 143 258 IPR005175 -
Seca11g04023 350 Gene3D - 143 273 - -
Seca11g04023 350 MobiDBLite consensus disorder prediction 290 350 - -
Seca11g04023 350 MobiDBLite consensus disorder prediction 30 76 - -
Seca11g04023 350 MobiDBLite consensus disorder prediction 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04023 Seca-Chr11 109189999 109192706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04023 98 307 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 34.553 3.50e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04023 - - gmx:100816781 150.984