Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04020 ATGGGGTTGGGTGCTGAGAATGGTAAGGTGGTGGAGTCTTTGGATGTGTGTAAATCAAAGGGGAGGAAGAAGAAGAAGAAAGAGGATGGGGTAGTGGAAGAGGAAGAGACTGGGTGTTGGCTCAGTCTGAGGTTCTTTGGGAGCTGCATTTCTTCAAGATCCAAGGTTGATAGCTCAGTTAGCGGCACCAGCACAAATTATGCTGAAAGTAAATCAACTAATGATACAAGTAGAGACCAACCAACAGTTCCAGTGGTCTCTTCGACAACCACTAGTAATGCTGAAAGCAATTCATCCACTTCCAAACTTGAAGAAGAGCTTAAAGTTGCTTCCAGGCTGCGAAAATTCACTTTCAATGATCTTAAGCTGGCCACAAGAAATTTTCGGCCCGAGAGTCTTCTTGGTGAAGGTGGGTTTGGATGTGTGTTCAAGGGATGGATAGAAGAAAATGGAACTGCTCCAGTAAAACCTGGCACAGGGCTTACTGTTGCTGTGAAAACCCTTAACCATGATGGGCTCCAGGGTCATAAAGAATGGCTGGCTGAAGTAAATTTTCTTGGTGATCTAGTTCATCCAAATCTTGTTAAACTCATAGGTTACTGCATTGAAGATGATCAAAGGTTGCTAGTTTATGAATTCATGCCTCGGGGAAGCCTAGAAAACCACTTGTTTAGGAGATCCCTGCCTCTTCCGTGGTCCATTAGGATGAAAATTGCATTAGGAGCTGCAAAGGGTCTTGCTTTTCTTCACGAGGAAGCTGAACGACCAGTAATATATAGGGATTTCAAAACTTCCAATATACTATTGGATGCAGTAAGAGATATTGTTACAATTCAGGATTATAATGCCAAGCTCTCAGACTTTGGACTTGCAAAAGATGGTCCAGAGGGTGATAAAACCCATGTGTCTACCCGAGTGATGGGAACTTATGGTTATGCAGCACCAGAATATGTCATGACGGGACATCTTACATCAAGAAGTGATGTGTATAGTTTTGGAGTGGTACTACTTGAGATGTTGACCGGCAGAAGATCCATGGACAAAAACCGACCCAATGGTGAACATAACCTTGTGGAATGGGCTAGACCACATCTAGGAGAAAGAAGAAGGTTCTACAGGTTGATAGACCCTCGCTTGGAAGGTCATTTTTCGATAAAAGGAGCTCAGAAAGCTGCGCATCTGGCTGCTCATTGCCTTAGCAGAGATCCAAAAGCCAGACCACTGATGAGTGAAGTTGTAGAAGCCTTAAAGCCTTTGCCAAACCTTAAGGACATGGCTAGTTCTTCATATTATTTTCAGACAATGCAAGCTGACCGTTTTAGTGCAAGCCCAAATACTAGAAATGGACGAACACAAGGAGGAGCATTGCTCACCCGGAATGGACAGCAGCAGAGGAGCCTTTCAATTCCACATGGTACTCATGCTTCTCCATATCACCATCAGTTTCCTCAACAATCACCAAAGCCCAATGGCAAGGCACAGGGTTGA 1488 0.4409 MGLGAENGKVVESLDVCKSKGRKKKKKEDGVVEEEETGCWLSLRFFGSCISSRSKVDSSVSGTSTNYAESKSTNDTSRDQPTVPVVSSTTTSNAESNSSTSKLEEELKVASRLRKFTFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLVHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDAVRDIVTIQDYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHLGERRRFYRLIDPRLEGHFSIKGAQKAAHLAAHCLSRDPKARPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRFSASPNTRNGRTQGGALLTRNGQQQRSLSIPHGTHASPYHHQFPQQSPKPNGKAQG. 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04020 495 Gene3D Transferase(Phosphotransferase) domain 1 214 438 - -
Seca11g04020 495 FunFam Probable serine/threonine-protein kinase PBL8 214 437 - -
Seca11g04020 495 ProSitePatterns Protein kinases ATP-binding region signature. 134 166 IPR017441 GO:0005524
Seca11g04020 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Seca11g04020 495 MobiDBLite consensus disorder prediction 54 100 - -
Seca11g04020 495 ProSiteProfiles Protein kinase domain profile. 128 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g04020 495 CDD STKc_IRAK 134 419 - -
Seca11g04020 495 MobiDBLite consensus disorder prediction 478 495 - -
Seca11g04020 495 SUPERFAMILY Protein kinase-like (PK-like) 106 416 IPR011009 -
Seca11g04020 495 MobiDBLite consensus disorder prediction 54 103 - -
Seca11g04020 495 FunFam Serine/threonine-protein kinase BIK1 95 213 - -
Seca11g04020 495 MobiDBLite consensus disorder prediction 461 495 - -
Seca11g04020 495 PANTHER OS01G0588500 PROTEIN-RELATED 91 419 - -
Seca11g04020 495 Gene3D Phosphorylase Kinase; domain 1 87 213 - -
Seca11g04020 495 Pfam Protein tyrosine and serine/threonine kinase 132 416 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04020 Seca-Chr11 109126372 109130194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04020 75 416 Glycoside Hydrolase AT3G07070 52.312 4.11e-114 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca11g04020 PK_Tyr_Ser-Thr 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04020 - - gmx:100807510 874.004