Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04018 ATGTGGAAAATGGCAGATGTGGCAACTCCGGATGATCCTTACGCTATCCAGCTGCTATTTGTTGATGAAGAGGGAGGGAGGATTGAGGGCACTGTCCAGAAGCACAACATGCACAAGTTTGCTCGCTCCATGGTAGAAGGCATGGTTTATAAGGTCTCAAAATTTGGAATTATCAGTAATTCCGGGAAGTTCCGAGCGGCTGTCCATGACTATAAGATTATTTTCAACTCCAACACACAAGTTTCCCCCTGCCCAAAAGCTTCCATTCCCTTCCTAGGCATGTCTTTCATGAACACAGCTGCTATCAAGAAGACGAAAGGCTCTTCTGATTATCTATTGGACTTCATGGGGGTGGTGACTGCTGTATCAGAAGAGATAAGAGTAAACAAGGAGGAAAAGGTTACCCGTTTTGTGTCTCTGGACATGGTTGACGACATGGGAACGATCCGATGTGCCATCTTTGGTAGCTTGGTTGATACTGTCATTGACTGCCTTTCTCACCCTCGGACAGGGCTTCCAGTGGTCATTATCCAGCTAGGCAAGAGTAATGTCTACAAGGGCCAAGTTGGTATTCAGAATGTAATGAATGCGACTAAAATTTGGTGGAATCCTATGATTCCGGAGTGCATTGAATTTAAGAATGGGTTAGCAGTTCATGAAGTCGAGTCTGACTTGGAGATTTCAGTAATCTCACAAAGGCCTAAAGCTGTATCAGTTAAGGATGAGTTCATGAAACTGTACCAAAGAAGAGCATTGCCCAACTTCATGATCTTGTGGAGGTTTGACGAAAATTTCATCATCATGGCCACAATTACTGAGATACTGGATGAAAAAATGTGGTGGTACACGGCGCACACATGTCTGAAAGCTGTTAACTTTGATCGTGGTTACCCTTTCTGCACTCATTGCAACCGGATTGTGTTTGACATGTGTCCAAGGTACAAGGTGAAGGTCCTTGCAACCGATGGGGATGATGCTGCCCACCTTATAATGTTTGACTCTGAATGCGCATTGCTGCTGAATAAGTCCTGCCAGGAACTTCTTGATGAGCAAGAGGACCCTACTTCCAATGCATATCCAGATGAGATTTTCAAGTTGGTTGGTAGAGAGGTGCTATTTCGGATTGAGGTGAAGGAGGATTCATTCATATCTTTTGATCACAGCTACAAGGTTAGGCGTGTGTGTTCTGATACCTCCATAATCAATGAGTATAAGGAATGTGTTGATGATGAGACACCACTGAAGCTCAAGTTTGTTCCCTTGTTCACCAAAGTGCAAGAAGAAGGAGGGAACAACTATGTCTTGGACCTATCTCCGCTGGGCAAATCTGTTCTCAGTAATGCAGAAAGCACCCCATCTTCCTGTGGGCAGTCCTCATCTACTGGACAGCCAAGTAGCAGTAGGTCTAAGAGGGAAGTTGAGCACATAGTGGATGAAAGTTGGGAATTGAGTAAGAGGGGAGTAAGATCCAAGCTTCAGTTAGCATGGACGTTGTCAGCAGGAGACGAATTCGCATTGAGGAAGGAAGCTTATATGAAATCCAACGAGCTATTTTGTCCCCAAACGATGAGGATGACAGGGCAACCAACCATACATTCAGGCTCTACTTTGATTTGGACTCAATTACTTTTGCTTGAATCACAAAGCTTAACTTCCTTCGGACTATCACCTTTGGCAACTGTTGATATTGGAGAACGGAAGAATGAAACAAAATATCTCATAGACAAGGTTGGGATGTTGACTGCTATCTCTTGTGAGCGAATGTATGTCAAAGACGAGCAACAAGTCAAAGTAATCTTCTTGGAGATCACGGACCCCACTGGGAAAACAGAATGTGCTGTTCATGATGCATATGCTGATGAGGTGCGTCACTTTGTCAAGACCCATGGCCCATGCACTCCAATTATCGTTGTCCAGTTTGCACGCATAGTGGCCTACGGCCAAGTCATTTTTGGCTGGTTAACAATGGTGAGATTAGAGGGTGGGCTTCAATACATGAGTTTGGATACACCAAATACATCCTTGAGGGATGAGTTCTTGCTGTACCATGACAGGCGCAAACTAGGCCAGCTGGTTGCAGGAACAGAGGTTTCCTCTTTTGTTGTATCTGCAATGATCACATCATTGCTTAAAGATGAGATCTGTTGGTTCTCCACTTGCAAGCACCACTCTTGCCCATTCCAGGGGCCTGCCTCTTTTACATGTGATGGCCATTACTCTGTCACCCCAAAGTTCAATTTGAAGGTTGAAGTGTCTGACGGAGCAGATTCAGCTGACGGAGCAGATTCAGCTTACTTCTTGTTGGGTGATGACGATGTTCGACGCCTTCTCAATGTACCTTGTGAAGAGCTTCTGTCTGATCACCCTGATGACCCTCTGTATCCTCCTGTTTTTGAACAACTTATTGGGCTACACATGTTGTTCTTGGTCGAAGTTCAGAAGAGGACATCAACTATGAATGGAGTATGCTTTAAGGTGAAAAGAGTGTGTGCAGATAGAGAGCTTATCAGAATGTTCTTGCGAGGGCAATTCTTTGGACATGAGGGCAATCAAAGACAAACAATAGCATGCTTGGTTGGTCACAGGGAGCACACAGAGGATTGTACTCATCCTTGGGGTAGCTCACATGCCAGTGCGTTGCCCCAAGATAACTTCTGCACTGCAAATTCTGATGTCGGTGAACCATCATCATCCAGCAGTGTGGCATGTACGAACCTTCCACCCACAAAAAATGGGGACAAAAATGGTAATTAA 2754 0.4481 MWKMADVATPDDPYAIQLLFVDEEGGRIEGTVQKHNMHKFARSMVEGMVYKVSKFGIISNSGKFRAAVHDYKIIFNSNTQVSPCPKASIPFLGMSFMNTAAIKKTKGSSDYLLDFMGVVTAVSEEIRVNKEEKVTRFVSLDMVDDMGTIRCAIFGSLVDTVIDCLSHPRTGLPVVIIQLGKSNVYKGQVGIQNVMNATKIWWNPMIPECIEFKNGLAVHEVESDLEISVISQRPKAVSVKDEFMKLYQRRALPNFMILWRFDENFIIMATITEILDEKMWWYTAHTCLKAVNFDRGYPFCTHCNRIVFDMCPRYKVKVLATDGDDAAHLIMFDSECALLLNKSCQELLDEQEDPTSNAYPDEIFKLVGREVLFRIEVKEDSFISFDHSYKVRRVCSDTSIINEYKECVDDETPLKLKFVPLFTKVQEEGGNNYVLDLSPLGKSVLSNAESTPSSCGQSSSTGQPSSSRSKREVEHIVDESWELSKRGVRSKLQLAWTLSAGDEFALRKEAYMKSNELFCPQTMRMTGQPTIHSGSTLIWTQLLLLESQSLTSFGLSPLATVDIGERKNETKYLIDKVGMLTAISCERMYVKDEQQVKVIFLEITDPTGKTECAVHDAYADEVRHFVKTHGPCTPIIVVQFARIVAYGQVIFGWLTMVRLEGGLQYMSLDTPNTSLRDEFLLYHDRRKLGQLVAGTEVSSFVVSAMITSLLKDEICWFSTCKHHSCPFQGPASFTCDGHYSVTPKFNLKVEVSDGADSADGADSAYFLLGDDDVRRLLNVPCEELLSDHPDDPLYPPVFEQLIGLHMLFLVEVQKRTSTMNGVCFKVKRVCADRELIRMFLRGQFFGHEGNQRQTIACLVGHREHTEDCTHPWGSSHASALPQDNFCTANSDVGEPSSSSSVACTNLPPTKNGDKNGN. 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04018 917 MobiDBLite consensus disorder prediction 448 472 - -
Seca11g04018 917 SUPERFAMILY Nucleic acid-binding proteins 264 406 IPR012340 -
Seca11g04018 917 CDD RPA1_DBD_C 265 382 IPR047192 -
Seca11g04018 917 MobiDBLite consensus disorder prediction 890 917 - -
Seca11g04018 917 Gene3D - 1 84 IPR012340 -
Seca11g04018 917 Pfam Domain of unknown function DUF223 18 86 IPR003871 -
Seca11g04018 917 MobiDBLite consensus disorder prediction 448 467 - -
Seca11g04018 917 SUPERFAMILY Nucleic acid-binding proteins 13 87 IPR012340 -
Seca11g04018 917 SUPERFAMILY Nucleic acid-binding proteins 95 217 IPR012340 -
Seca11g04018 917 Gene3D - 682 838 IPR012340 -
Seca11g04018 917 Gene3D - 260 409 IPR012340 -
Seca11g04018 917 Pfam Replication factor-A C terminal domain 265 383 IPR013955 -
Seca11g04018 917 Gene3D - 88 223 IPR012340 -
Seca11g04018 917 CDD RPA1_DBD_B_like 114 213 - -
Seca11g04018 917 SUPERFAMILY Nucleic acid-binding proteins 696 818 IPR012340 -
Seca11g04018 917 CDD RPA1_DBD_A_like 1 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04018 Seca-Chr11 109094084 109101496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04018 20 382 Core DNA Replication Machinery Family AT5G61000 22.251 4.88e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04018 - - lja:Lj6g3v0884310.1 305.064