Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04007 ATGGCTGGTGGAAAGCTTTATGGGGATTCAAGCATGACACTTTTACTCCAAAATGAAAGGCTTCCATGCCCCTCTGAGTTTGTTGAGTCTCTCTGGGTCCACAGTCACCACTCTGAACCTTCTTTACAAGGTTCAAAATCCCTGGTTAATGTTTTGAATGTTAGTGGCAGTGGGGTCACAGATAGGCCCTTGTTTCAAGCGCTTGAGAAAGAAGAGAACGGTGATGATGAAGATTATGAAGTGTGCTTCCAAAAACCCGGTAAGAAAAGGAGGCTCACAAGCGAACAAGTTCAGTTCCTTGAAAGTAACTTTGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGTCCAACTTGCAAAGGAACTTGGCTTGCAGCCAAGGCAAGTGGCCATATGGTTCCAAAACCGAAGGGCAAGGTTCAAAACTAAACAGCTAGAAAAAGACTATGACACTTTGAAAACTAGCTATGACATGCTCAAAGGTGATCATGACAATCTCCTTCAAGAGAATGAGAAGTTAAGAGAAGAGGTAGTTAATTCTCTGAAGAAGAGATTGATTCCTAGAGAGATAGAGAAACAGAATTTAGATGACAAGCCATGTGATGCTGTCATTTCCCAACATAAAGAGCACATGGATTTAATCATAAATGGAGCTCCTGAAAATGGGTCCAAAGTGCCACTTCCTGTTATGGTCATCTACAAACAGGAAGATGCTAATTCAGCTAAAAGTGATGTGGTTGATTCAGAGAGCCCACATTACACTGATGGAAACCAATCCTCATTTGTGGAGCCTGCAGATTCATCTCATGGTTTGGAATTAGATCAGTCAGATTTCTCACAAGATGAAGAAGACATCCTAAGCCAAAACTTCTTGACAGTGCCATTCGGATTCCTACCGAAGGTTGAAGATGGCTTCTATGATGAACCACCTGAAAATTATTGCAGTTTTCGGCTCCCAGTTGAAGATCAAACCTTCTGTTTTTGGTCTTACTGA 993 0.4169 MAGGKLYGDSSMTLLLQNERLPCPSEFVESLWVHSHHSEPSLQGSKSLVNVLNVSGSGVTDRPLFQALEKEENGDDEDYEVCFQKPGKKRRLTSEQVQFLESNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYDTLKTSYDMLKGDHDNLLQENEKLREEVVNSLKKRLIPREIEKQNLDDKPCDAVISQHKEHMDLIINGAPENGSKVPLPVMVIYKQEDANSAKSDVVDSESPHYTDGNQSSFVEPADSSHGLELDQSDFSQDEEDILSQNFLTVPFGFLPKVEDGFYDEPPENYCSFRLPVEDQTFCFWSY. 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04007 330 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 73 248 IPR045224 GO:0003700
Seca11g04007 330 SUPERFAMILY Homeodomain-like 78 145 IPR009057 -
Seca11g04007 330 PRINTS Lambda-repressor HTH signature 114 123 IPR000047 GO:0003677
Seca11g04007 330 PRINTS Lambda-repressor HTH signature 123 139 IPR000047 GO:0003677
Seca11g04007 330 Coils Coil 156 183 - -
Seca11g04007 330 Gene3D - 82 151 - -
Seca11g04007 330 MobiDBLite consensus disorder prediction 240 273 - -
Seca11g04007 330 ProSitePatterns 'Homeobox' domain signature. 118 141 IPR017970 GO:0000981|GO:0006355
Seca11g04007 330 MobiDBLite consensus disorder prediction 244 265 - -
Seca11g04007 330 CDD homeodomain 86 144 IPR001356 GO:0003677
Seca11g04007 330 ProSiteProfiles 'Homeobox' domain profile. 83 143 IPR001356 GO:0003677
Seca11g04007 330 FunFam homeobox-leucine zipper protein ATHB-6-like 91 137 - -
Seca11g04007 330 SMART HOX_1 85 147 IPR001356 GO:0003677
Seca11g04007 330 Pfam Homeobox associated leucine zipper 143 185 IPR003106 GO:0006355|GO:0043565
Seca11g04007 330 Pfam Homeodomain 88 141 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04007 Seca-Chr11 107621123 107623245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04007 44 185 Homeobox Transcription Factor Family AT3G01470 54.930 9.70e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca11g04007 Homeodomain 3.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04007 K09338 - gmx:100804328 457.218