Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04002 ATGTACGAGAAAAGCTATATACGCATCGTGATGTGGTTGCAAGAGGCTATCTGGTTAGAATGCACACAAGAAGCATGTGAAATCATATTTGTTCCTAGCGGATGGTATCATCAAGTTCATAATTTGGTATGTTCTGGTTCCCCACCTGGATTGTTGTTATGTTCCTGCTTGATTTTGAAAGGCTATTTTGATATACCAAATAAATTAATTATTGTGTTAAAGTAA 225 0.3556 MYEKSYIRIVMWLQEAIWLECTQEACEIIFVPSGWYHQVHNLVCSGSPPGLLLCSCLILKGYFDIPNKLIIVLK. 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04002 74 SUPERFAMILY Clavaminate synthase-like 16 42 - -
Seca11g04002 74 Gene3D Cupin 3 47 - -
Seca11g04002 74 ProSiteProfiles JmjC domain profile. 1 74 IPR003347 -
Seca11g04002 74 Pfam JmjC domain, hydroxylase 16 43 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04002 Seca-Chr11 107361802 107364193 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca11g04002 JmjC 1.4e-05 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04002 - - dcr:108215606 63.1586