Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03988 ATGGATGTTAAGACTGCGTTTCTCAATGGTGACATTGAGGAGACGATTTATATGGTGCAACCAGAAAACTTTGTGATAGGTGATCCAAAGTCTATGGTATGCAAACCTATGGTCTCAAACAAGCATCCTGTCAATGGTATCACCAGTTTCATCAAAGATGAGATGAAAAAGATTCCTTATGCCTCAGCAGTAGGAAGTCTGATGTATGCTCAAGTATGCACTTGTCCTGATATAGCATTTGTAGTGGGAGTTTTGGGTAGATATCTAAGTAATCCTGGAATGCAGCATTGGAAAACTCTGATTGGGCTGGATGTCAAGATAGCAAACACTCTACATCAGGATATGTTTTTTATGTTGGCTGGAGGAGCTATTTCTTGGAGGTCTGCTAAGCAAACACTCATAGCTACTTCAACCATGGCAATGGAGTTTATTGTTTGTTTTGAGGTGTCCAACCACTGTCCCGTTTTGGGAACTCAAGAGATTTGGTTGAGGAAGGCCACAACACCATCTCTATCTAACCCTTTATTTTGTGCCTTCTATTTGGCGTTGAATCCACAAGAGGAGGTTCATGACGTTCATTACCTACCCAAAGATTTCCCCTGCATTGTGATAAAGCTTGATGGATCCAGTATCGAAAGGATTAAAAATTGCACCATATCAGATACTAGGCAAAGGAACATGCAAACGATGAGTGATAGAGAAAAGGGTCAACCCCCGGCATATCCTGAAGTTGTTCACTTAATCCATCCATCTAACCCACAATTTACAGGAGAGTTTAAACTGCCTATGATATGCATGAGTGATTGTGTTGGGCTCAGGTGGATGACAAGTAGCAATACTCAATTGAGAACACAGACAACAATGTTAATGGTTGGATTGCCACAGATTCTAGACCAACTATAG 903 0.4109 MDVKTAFLNGDIEETIYMVQPENFVIGDPKSMVCKPMVSNKHPVNGITSFIKDEMKKIPYASAVGSLMYAQVCTCPDIAFVVGVLGRYLSNPGMQHWKTLIGLDVKIANTLHQDMFFMLAGGAISWRSAKQTLIATSTMAMEFIVCFEVSNHCPVLGTQEIWLRKATTPSLSNPLFCAFYLALNPQEEVHDVHYLPKDFPCIVIKLDGSSIERIKNCTISDTRQRNMQTMSDREKGQPPAYPEVVHLIHPSNPQFTGEFKLPMICMSDCVGLRWMTSSNTQLRTQTTMLMVGLPQILDQL. 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03988 300 PANTHER GAG-POL-RELATED RETROTRANSPOSON 1 35 - -
Seca11g03988 300 Pfam Rhamnogalacturonate lyase family 212 258 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03988 Seca-Chr11 106123857 106126465 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03988 202 258 Polysaccharide Lyase AT2G22620 47.368 2.12e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03988 - - gmx:121173962 149.443