Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca11g03976 | ATGGGTGCAGGGGACTACTACAAGATCCTGAGGGTGAACCGTAATGCCACAGATGAGGAGCTGAAAAAGGCATATAAGAAGTTAGCCATGAAGTGGCACCCGGATAAGAACCATCAACAACACCAAGTCAAGAAAGAAGAAGCTGAGGCCAAATTCAAGCAGATTTCAGAGGCCTATGATGTCCTTAGCGACCCAAAGAAGCGCCAGATCTATGATTTCTATGGCCACTATCCCCTTAACTCTATGAAGATGAACAAGGAAAATGGTGATGGGGATGTTAAGATTCCCAAGGACGAGAAATTTGGGGTTGTTGAAAGCAAATTGGTGTGTACCCTTGAGGAACTTTACAAAGGTTGTAGAAGGAAATTGAAGATCTCAAGGGCTGTTCCTGATGAATTCGGAGTAATTTGA | 411 | 0.438 | MGAGDYYKILRVNRNATDEELKKAYKKLAMKWHPDKNHQQHQVKKEEAEAKFKQISEAYDVLSDPKKRQIYDFYGHYPLNSMKMNKENGDGDVKIPKDEKFGVVESKLVCTLEELYKGCRRKLKISRAVPDEFGVI. | 137 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca11g03976 | 136 | Gene3D | - | 102 | 134 | - | - | |
| Seca11g03976 | 136 | PRINTS | DnaJ domain signature | 7 | 25 | IPR001623 | - | |
| Seca11g03976 | 136 | PRINTS | DnaJ domain signature | 67 | 86 | IPR001623 | - | |
| Seca11g03976 | 136 | PRINTS | DnaJ domain signature | 25 | 40 | IPR001623 | - | |
| Seca11g03976 | 136 | PRINTS | DnaJ domain signature | 47 | 67 | IPR001623 | - | |
| Seca11g03976 | 136 | Pfam | DnaJ domain | 5 | 72 | IPR001623 | - | |
| Seca11g03976 | 136 | Gene3D | DnaJ domain | 2 | 95 | IPR036869 | - | |
| Seca11g03976 | 136 | PANTHER | DNAJ HOMOLOG SUBFAMILY C MEMBER | 1 | 132 | - | - | |
| Seca11g03976 | 136 | CDD | DnaJ | 5 | 64 | IPR001623 | - | |
| Seca11g03976 | 136 | ProSitePatterns | Nt-dnaJ domain signature. | 52 | 71 | IPR018253 | - | |
| Seca11g03976 | 136 | FunFam | DnaJ-like subfamily B member 13 | 2 | 96 | - | - | |
| Seca11g03976 | 136 | SUPERFAMILY | Chaperone J-domain | 4 | 82 | IPR036869 | - | |
| Seca11g03976 | 136 | Coils | Coil | 38 | 58 | - | - | |
| Seca11g03976 | 136 | ProSiteProfiles | dnaJ domain profile. | 5 | 75 | IPR001623 | - | |
| Seca11g03976 | 136 | SMART | dnaj_3 | 4 | 67 | IPR001623 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca11g03976 | Seca-Chr11 | 105784172 | 105786667 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca11g03976 | 6 | 74 | C2H2 Transcription Factor Family | AT1G74250 | 36.232 | 3.80e-12 | 60.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca11g03976 | K09510 | - | gmx:100786068 | 237.269 |