Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03964 ATGAGCAATTCTTGTTTAAACTCCAAGAGAATAGTATTCCAATTCCTTTGTGGATTTCTTCTCTTATATATAAGCACATGCAAGGACTTTGCAACCGGATCTACCCTGCAAAGAAATGAAACTGATCTACATGCCTTACTTGACTTGAAGAGTAAGATAGTTCATGATCCATTCCAAATTATGAGTTTGTGGAATGATTCCATCCACCACTGCAACTGGGTAGGAATTACCTGCAACATCTCCAATGGAAGGGTGATGTATTTGATCCTTGCAGACCTGACATTGAGGGGTACTATTCCACCATCTATAGGAAATCTTACATTCCTAACCAGACTCAACCTGAGAAGTAATGGTTTCCATGGAGAGTTTCCTCAAGAAGTTGGGCGTCTACAATACCTGCAACACCTAAACATTAGTTACAATTCTTTTGGTGGTAGTATTCCAAGTAATCTAAGTCACTGCAAAGAACTGCTTATATTAACTGCTGCTGGTAACAACTTCACTGGAAGAATTCCAGCATGGATAGGGAACTCTTCTTTATCTATAGTTAACCTTGCTGAGAACAACTTTCATGGAAGCATACCAAATGAGGTAGGGCAATTATCAAGCTTGAGAGCTCTTGTTTTAACAGGAAATTACTTGTCTGGAACAATTCCTCCTTCAATTTTCAATATTTCTACCTTATTCTTTTTCACAGTTACTCAAAATCATCTGCATGGTAACATACCAGCTTATGTTGGTTTTACTCTTCCTAATCTTGAAACATTTGCTGGTGGAGTCAACAATTTCACTGGAACAATTCCTGAGTCACTGTCAAATGCATCAAGGCTAGAAATTCTTGACTTTGCTGAAAATAGTCTAACTGGCACACTTCCTAAGAACATAGGAAGATTGTCCCATTTGATAAGACTCAATTTTGATGACAATAGACTTGGAACTGGGAAAGCTGGTGACCTGAATTTTCTAGCTTCCTTGGTTAACTGTACTGCTCTTGAAGTTTTGGGTCTTTCTGGAAATAAATTTGGAGGAGAATTGCCTAGCTCAATTACTAATCTTTCAACCCAATTGACTATACTTACATTAGGTAGAAATGCAATACATGGAAATATACCTGTTGGGATTGGCAATCTGGCTAACCTGGCCCTTCTAGGATTGGAAGAAAACCACTTAACTGATAGTGTTCCTGATGAATTAGGTAAGCTGCAAAATTTGCAAGGATTGTATCTTAATGTCAACAAATTTTCAGGAAGAATCCCATCCTTCTTAGGAAATTTATCTTCATTAACAAAACTCTTTTTGGAGGAGAACACTTTTGAAGGAAGCATACCTTCTAGTCTTGGAAAATGTCAGAAGCTATTGGTACTTAGCCTTTATAGTAACAAGCTTAGTGGAACCATACCAAAAGAAGTCGTTAGCATTTCTTCTCTAGCAATATACTTAAGCATGTCTCATAATGCTTTGTCAGGGACTCTGCCAGCTGAAGTGGGTAAGCTACATAATCTTGGAGCATTGGTGCTGTCTGAAAATAATCTTTCTGGAAACATCCCATCTTCTCTTGGCAGCTGCATTAGCTTGGAACGGCTGCATTTGCAGGGAAACTCTTTCCAGGGAGACATTCCTCAAACTTTAAACAATTTGAGAGGTTTACTTGATATAGATCTTTCACGCAATAACCTGTCTGGTAAGATTCCTGAATTTCTTGGTGAGTTCACAGAGCTCAAGCATCTCAATCTTTCTTACAACAATTTTGAAGGTGAAATACCAAAGAATGGGATCTTCAAGAATGCAACTTTGATTTCATTATATGGAAACAACAAGCTCTGTGGTGGTATCCCAGAATTGAATTTTCCTGCATGCACTATCAGGAAAGCCTCTATGCTAAGAAAACTTCTTGCCCCCAAAGTGGCTATCCCAATAGCTTTTGCACTCATATTTGTACTCTTGTTATCATGTTTTCTTGCATTCTCCCCCATAGTAAAAAGAGCAAGAATGGGAACTTCCAGATCAATGACTGCTAATGACTTTGAATTGCAAGTTTCTTACTCAGAAATTGCAAGGTGCACTGGTGAGTTCTCCCAGGATAACTTGATTGGCTCAGGAAGTTTTGGTTCTGTATACAAAGGAACTCTTTCAGGATCAACTGTTGCAGTTAAAGTATTAAATCTTCAACAAAGAGGAGCTTCAAGGATCTTCATTGATGAATGCCAATTTTTGAGAAGTATAAGGCACCGCAACCTTATCAAAATCATAACTGCTATCTCAAGTGCTGATCATCAAGGTAATGACTTCAAAGCTCTGGTGTTTGAGTTCATGTCTAATGGCAGTCTAGAAGACTGGTTGCATCCTATAAATAATCTGCAATACCAGACTAAGACATTGACATTTGTCCAAAGATTGAATATAGCAATTGATGTTGCATGTGCCCTGGAATATCTCCACCACTTTTGTCAAACTCCAATCATTCATTGTGATATCAAGCCAAGCAATGTACTTCTTGACAATGATATGGTAGCTCATGTTGGTGACTTTGGAATAGCTACATTTTTGTTTGAAGAATCATGCAGGTTTTCCAAACAATCAACTATGTCAGCTAGCCTAAAGGGCTCTATCGGGTACATTCCTCCAGAGTATGGAATGGGTGGCCACCCTTCTGCACTGGGAGATGTTTTCAGTTATGGGATACTATTACTTGAGATTTTCACAGGAAAAAGACCAACAAATGAGATGTTTGAAGGTGGCATTGGAATTAACCAGTTTGCAGCCTTGGCTTTGCCAAATAATGCCATAGATATAATTGATCCTTTATTGCTCTCTGAGTTTGAAATTGATGATAGAAATAAAGGAGTTTTCACAGAGGAGACAGCAATAAGGAGGGATCAGGAACCTGAAGTGCTTGCTGCAATGGAGAATTGTTTGGTTTCAGTGTTGCAAATTGGAGTGTCATGCTCTGCAACTTCACCAAGTGAAAGATCGCCTATGACTGTGGTTGTCAACAAACTGCATGCAATCAAGAACTCATATTTAAGATTAAGTAAATTAGAATGGAATATGAAAAAGGAAAAGGGTGGAGGTAAAATGCCTTTGTAA 3087 0.3839 MSNSCLNSKRIVFQFLCGFLLLYISTCKDFATGSTLQRNETDLHALLDLKSKIVHDPFQIMSLWNDSIHHCNWVGITCNISNGRVMYLILADLTLRGTIPPSIGNLTFLTRLNLRSNGFHGEFPQEVGRLQYLQHLNISYNSFGGSIPSNLSHCKELLILTAAGNNFTGRIPAWIGNSSLSIVNLAENNFHGSIPNEVGQLSSLRALVLTGNYLSGTIPPSIFNISTLFFFTVTQNHLHGNIPAYVGFTLPNLETFAGGVNNFTGTIPESLSNASRLEILDFAENSLTGTLPKNIGRLSHLIRLNFDDNRLGTGKAGDLNFLASLVNCTALEVLGLSGNKFGGELPSSITNLSTQLTILTLGRNAIHGNIPVGIGNLANLALLGLEENHLTDSVPDELGKLQNLQGLYLNVNKFSGRIPSFLGNLSSLTKLFLEENTFEGSIPSSLGKCQKLLVLSLYSNKLSGTIPKEVVSISSLAIYLSMSHNALSGTLPAEVGKLHNLGALVLSENNLSGNIPSSLGSCISLERLHLQGNSFQGDIPQTLNNLRGLLDIDLSRNNLSGKIPEFLGEFTELKHLNLSYNNFEGEIPKNGIFKNATLISLYGNNKLCGGIPELNFPACTIRKASMLRKLLAPKVAIPIAFALIFVLLLSCFLAFSPIVKRARMGTSRSMTANDFELQVSYSEIARCTGEFSQDNLIGSGSFGSVYKGTLSGSTVAVKVLNLQQRGASRIFIDECQFLRSIRHRNLIKIITAISSADHQGNDFKALVFEFMSNGSLEDWLHPINNLQYQTKTLTFVQRLNIAIDVACALEYLHHFCQTPIIHCDIKPSNVLLDNDMVAHVGDFGIATFLFEESCRFSKQSTMSASLKGSIGYIPPEYGMGGHPSALGDVFSYGILLLEIFTGKRPTNEMFEGGIGINQFAALALPNNAIDIIDPLLLSEFEIDDRNKGVFTEETAIRRDQEPEVLAAMENCLVSVLQIGVSCSATSPSERSPMTVVVNKLHAIKNSYLRLSKLEWNMKKEKGGGKMPL. 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03964 1028 SUPERFAMILY L domain-like 354 609 - -
Seca11g03964 1028 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 771 1012 - -
Seca11g03964 1028 SMART serkin_6 691 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03964 1028 Gene3D Phosphorylase Kinase; domain 1 673 770 - -
Seca11g03964 1028 Gene3D Transferase(Phosphotransferase) domain 1 771 1019 - -
Seca11g03964 1028 Pfam Leucine rich repeat N-terminal domain 40 79 IPR013210 -
Seca11g03964 1028 PANTHER OS04G0122200 PROTEIN 199 1007 - -
Seca11g03964 1028 FunFam LRR receptor-like serine/threonine-protein kinase EFR 317 625 - -
Seca11g03964 1028 Pfam Leucine rich repeat 524 583 IPR001611 GO:0005515
Seca11g03964 1028 Gene3D Ribonuclease Inhibitor 248 316 IPR032675 -
Seca11g03964 1028 Gene3D Ribonuclease Inhibitor 163 247 IPR032675 -
Seca11g03964 1028 Gene3D Ribonuclease Inhibitor 41 156 IPR032675 -
Seca11g03964 1028 ProSitePatterns Protein kinases ATP-binding region signature. 697 718 IPR017441 GO:0005524
Seca11g03964 1028 Gene3D Ribonuclease Inhibitor 317 619 IPR032675 -
Seca11g03964 1028 ProSitePatterns Serine/Threonine protein kinases active-site signature. 820 832 IPR008271 GO:0004672|GO:0006468
Seca11g03964 1028 FunFam LRR receptor-like serine/threonine-protein kinase EFR 662 770 - -
Seca11g03964 1028 SUPERFAMILY Protein kinase-like (PK-like) 665 1000 IPR011009 -
Seca11g03964 1028 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 219 315 - -
Seca11g03964 1028 Pfam Protein kinase domain 692 907 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03964 1028 SUPERFAMILY L domain-like 39 311 - -
Seca11g03964 1028 ProSiteProfiles Protein kinase domain profile. 691 1008 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03964 1028 FunFam Leucine-rich repeat receptor-like protein kinase 39 196 - -
Seca11g03964 1028 SMART LRR_typ_2 425 449 IPR003591 -
Seca11g03964 1028 SMART LRR_typ_2 377 401 IPR003591 -
Seca11g03964 1028 SMART LRR_typ_2 130 154 IPR003591 -
Seca11g03964 1028 SMART LRR_typ_2 201 225 IPR003591 -
Seca11g03964 1028 SMART LRR_typ_2 498 522 IPR003591 -
Seca11g03964 1028 SMART LRR_typ_2 570 595 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03964 Seca-Chr11 105042905 105046558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03964 39 1015 Receptor kinase-like Gene Family AT3G47570 44.576 0.0 810
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca11g03964 Pkinase 5.8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03964 - - gmx:100785230 1493.02