Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03952 ATGGATCCGAGTGCGATGATGAACGAGGGTTCATTTGCGAATGGGAGTAACAATACGGCGCCGTTTAGCTTGGCGGAGATCTGGCAGTTCCCGGCGGCGATTAATGGCGGCGGAGGATTGGGGCTTAGGAGGCCGCAGTTCGGACATGGTTTGGGGCAGTTTGGGGATTTCTCAACCGGTCCGAACCGGGATGTTAATGGACCGGTTGGACCGGACCAGGGAACATCGAACCATGGCGTTGGTAATAGGAAGAGGCGTGACTCGGAGGATGATTCGGCTAAGGGTGTGTCCACCAGCAATGGCGGTGGCAATGGCGTGAATGATGGTGATGGAAAACGGCTTAGAGCATCAGGGAACATGAATGAGGGTGGTGATGGTAAAGTTGAAGGAGAAGCCAGTTCAGGAAAGCCTGCGGAGCAAAGCACTCAACCACCTCCTGATCCTCCTAAGCAAGATTACATCCACGTTCGAGCGAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAAAGAGCTAGAAGGGAAAAGATTAGTGAAAGGATGAAAATTCTTCAGGATTTGGTCCCCGGTTGTAATAAGGTTATTGGAAAAGCATTGGTCCTTGATGAGATAATTAATTATATCCAATCTCTTCAACGCCAAGTTGAGTTTTTGTCCATGAAGCTTGAAGCAGTGAATTCAAGACTGAACTCTGGCATTGAAGCATTTCCTCCTAAAGATGTAAGTTTTGGTCAGCAAACATTTGATCTAGTTGGCATGCCATTTGGTTCACAAGCTACAAGAGAGCATAGCAGAGGCTCTTCACCAGAGTGGTTACATATGCAAGTAGGAGGTGGTTTTGAAAGAACAACGTAA 858 0.4825 MDPSAMMNEGSFANGSNNTAPFSLAEIWQFPAAINGGGGLGLRRPQFGHGLGQFGDFSTGPNRDVNGPVGPDQGTSNHGVGNRKRRDSEDDSAKGVSTSNGGGNGVNDGDGKRLRASGNMNEGGDGKVEGEASSGKPAEQSTQPPPDPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNSGIEAFPPKDVSFGQQTFDLVGMPFGSQATREHSRGSSPEWLHMQVGGGFERTT. 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03952 285 Pfam Helix-loop-helix DNA-binding domain 166 213 IPR011598 GO:0046983
Seca11g03952 285 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 212 IPR011598 GO:0046983
Seca11g03952 285 CDD bHLH_AtBPE_like 152 237 - -
Seca11g03952 285 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 82 264 IPR024097 GO:0006355
Seca11g03952 285 FunFam Basic helix-loop-helix transcription factor 159 231 - -
Seca11g03952 285 MobiDBLite consensus disorder prediction 79 93 - -
Seca11g03952 285 SMART finulus 168 218 IPR011598 GO:0046983
Seca11g03952 285 Gene3D - 159 235 IPR036638 GO:0046983
Seca11g03952 285 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 229 IPR036638 GO:0046983
Seca11g03952 285 MobiDBLite consensus disorder prediction 35 153 - -
Seca11g03952 285 Coils Coil 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03952 Seca-Chr11 104329430 104332629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03952 1 269 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 54.874 1.07e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca11g03952 HLH 2.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03952 - - gmx:100784478 405.216