Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03947 ATGGCAACTTCTTCTGCTGTTGCTGTTGCTGAATTTCATCCCGATACACATGAGGTTTTCGTTAGCTTCAGAGGCGAAGACACGCGTGGGAACTTCACGAGCCACCTTTTTGAATCTTTGCATAAAAAACAGATCAAAGCATACAGAGATCAGGAAATGAACAAAGGAGATGAGATCTCGTCATCGCTTCGCAAAGCAATTGAAGATTCGTACATATCAGTCATCATTTTCTCAGAAAACTATGCATCCTCAAAGTGGTGCTTGGATGAACTCCTTATAATACTCGATTGCAGGAAAAGGAGAGGGCAGTGTGTTATTCCTGTCTTCTATAAAGTTGATCCATCCAATGTGCGGAATCTCAGAGGGAGTTACAAAGAAGCATTCGCAAAACATGAGGGAAATTACAGCATCAATCGAGACAAATTGACCAAATGGAAAGAAGCTATTTATGAATCAGCCAACTTAGCAGGATATGACTCTCGAAAATATGGGGAGGAATCAGAACTCATTGAAGAGATTGTCAAAGATGTTTTGAAAAAAATGGATTATATGTACCCACAAGAGGAAACAAAATGTCCTTTTGGATTTCATGAAAACCTTGCACCTATTGAATCATCATGGTTTAAAGAATGTCGAGCAATTGGAATTTGGGGTATGGGCGGTATAGGAAAAACAACCATTGCTAAATGGCTATTTGAAAAATACTCTTGTCAATATGAAAGTTCCTACTTCATGGCAAATATAAGGGAAATTTCAGGAAAGGGTGGACAGGCACTATGTAATGAACTTGTTTCCAAGCTTTTAGATGAGAGTACTGCGACAACCAAATCCACTTTTGTTAAGCGTAGGCTCAATCGTAAAAGAGTTTTCGTGGTGCTTGATGATGTGAGTACTTTGGAGCAATTAGAATATCTGGATGAAGTACTTCAATGTTTGGGATCAAGCAGTAGAATTGTCATTACAACCAGAGACAAGCATGTCCTAATCAAAGGAAATGTTGACGCAATCCATGAGGTTAAGGGATTGAACTTTCAAGAATCACTTCAGCTTTTCAGTTTGAATGCTTTCAACCAATTGGATCCTAAAACGGGATTTGAAGATTTATCAAGAAGGGCAATTGATTATGCGAAGGGTTTACCATTAGCTCTAAAGGTTTTAGGTTCTTTTCTTCATTCCAAAAATGAAAATGAATGGGAAAGTGCATTGAGGAAATTGAACAAGATTCCAAATGGACAAATTCACGGTGTTTTAAAATTGAGTTACGATGGATTAGACCGTGAAGAGAAGGAAATATTCCTAGATATTGCATGTTTTTTTAATGGATATTACAAAGAGGATGTCATAAGCATAGTAGACAGCTATGGCTGGCATGCAGCTATTGGCCTTAGAACCCTTCAAGAGAGAGCTCTTATAACCATAACTGGTTGGAACAATTCTGTAAGGATGCATGACTTGATACAAGAAATGGGATGGGAAATTGTTCGTGAAGAATCTATCAAAGAACCTGGAGAACGCAGTCGATTGTGGGATCCAGTGGAAGTGTATGATGTACTGAAAAATAATCGGGGGACTAAAAATGTTGAAGGCATAATATTAGATATGTCTCAAATTAGAGATCTGCATATCAGTGGTGACACATTCAAAAAGATGATGAATATAAGAATTTTGAAATTTTACTTACCATCAGAATTTGAGTATTCTAAATTGCACCTTTCTTCACATCTCCAATTGTCTTCTGATAAATTAAGGTACCTACAATGGGATGGATTTACTTCAAGGTCTCTACCACTAACATTTTGTCCGGAGAAGCTTGTTGAGCTTTCCATGCGAGACAGCCAGCTTGAGAAACTTTGGGATGGAGTGCAGGATTTGGCGAATTTAAAAAGAGTAGATCTTCGTGGATCCAAAAGGTTGATTGAACTCCCAGATTTCTCTCTGTCGTCAAATCTTGAAGAAGTAAATCTCTCCGAGTGTGAAAGTTTGTGTTGTGTTCATCCATCTCTCTTGTCTCTCCCCTCACTTGTTTCTTTGAATGTATCTTCGTGCATAACCATTAAGCGTTTGCCTGCAAGCATCAACCAACTTCCAAAGCTGAAATATTTTGACTTAAGAGATTGCAAGAGGCTTGATTCCCTGCCAGAACTTCCACAGTCAATTAAAGAGATATATCTAAGTGGAAGCAATATTAAGTGTTTGCCTGCAAGCATCAACCAACTTCCAAAGCTGAAATTTCTTGACTTAAGAGATTGCAAGAGGCTTCAGTCCCTGCCAGAACTTCCACAATCAATTGAAGTTATAAATCTAAGAGGAAGTAATATTAAGTGTTTGTCTGCAAGCATCAACCAGTTTCCAAAGTTGAAATATCTTGACTTAAGAGATTGGAAGAGGCTTGATTCCCTGCCAGAACTTCCACAATCAATTGAAGATATAAATCTAAGTGGAAGCAATATTAAGTGTTTGCCTGCAAGTATTCCAAAGCTGAAATATCTTGACTTAAGAGATTACAAGATGCTTCAGTCCCTGCCAAAACTTCCACAATCAATTAAAGAGATAGATCTAAGTAGAAGCAAATTAAGTGTTTGCCTGCAAGCATCAACCAACTTCCAAACCTGA 2613 0.3804 MATSSAVAVAEFHPDTHEVFVSFRGEDTRGNFTSHLFESLHKKQIKAYRDQEMNKGDEISSSLRKAIEDSYISVIIFSENYASSKWCLDELLIILDCRKRRGQCVIPVFYKVDPSNVRNLRGSYKEAFAKHEGNYSINRDKLTKWKEAIYESANLAGYDSRKYGEESELIEEIVKDVLKKMDYMYPQEETKCPFGFHENLAPIESSWFKECRAIGIWGMGGIGKTTIAKWLFEKYSCQYESSYFMANIREISGKGGQALCNELVSKLLDESTATTKSTFVKRRLNRKRVFVVLDDVSTLEQLEYLDEVLQCLGSSSRIVITTRDKHVLIKGNVDAIHEVKGLNFQESLQLFSLNAFNQLDPKTGFEDLSRRAIDYAKGLPLALKVLGSFLHSKNENEWESALRKLNKIPNGQIHGVLKLSYDGLDREEKEIFLDIACFFNGYYKEDVISIVDSYGWHAAIGLRTLQERALITITGWNNSVRMHDLIQEMGWEIVREESIKEPGERSRLWDPVEVYDVLKNNRGTKNVEGIILDMSQIRDLHISGDTFKKMMNIRILKFYLPSEFEYSKLHLSSHLQLSSDKLRYLQWDGFTSRSLPLTFCPEKLVELSMRDSQLEKLWDGVQDLANLKRVDLRGSKRLIELPDFSLSSNLEEVNLSECESLCCVHPSLLSLPSLVSLNVSSCITIKRLPASINQLPKLKYFDLRDCKRLDSLPELPQSIKEIYLSGSNIKCLPASINQLPKLKFLDLRDCKRLQSLPELPQSIEVINLRGSNIKCLSASINQFPKLKYLDLRDWKRLDSLPELPQSIEDINLSGSNIKCLPASIPKLKYLDLRDYKMLQSLPKLPQSIKEIDLSRSKLSVCLQASTNFQT. 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03947 870 Gene3D - 194 336 IPR027417 -
Seca11g03947 870 Pfam Leucine Rich Repeat 603 622 IPR011713 -
Seca11g03947 870 Gene3D Ribonuclease Inhibitor 513 720 IPR032675 -
Seca11g03947 870 ProSiteProfiles TIR domain profile. 15 181 IPR000157 GO:0007165
Seca11g03947 870 SUPERFAMILY L domain-like 526 860 - -
Seca11g03947 870 PRINTS Disease resistance protein signature 376 390 - -
Seca11g03947 870 PRINTS Disease resistance protein signature 737 753 - -
Seca11g03947 870 PRINTS Disease resistance protein signature 283 297 - -
Seca11g03947 870 PRINTS Disease resistance protein signature 213 228 - -
Seca11g03947 870 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 715 IPR044974 GO:0006952
Seca11g03947 870 Gene3D - 13 185 IPR035897 -
Seca11g03947 870 SUPERFAMILY "Winged helix" DNA-binding domain 412 519 IPR036390 -
Seca11g03947 870 Pfam TIR domain 17 189 IPR000157 GO:0007165
Seca11g03947 870 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 435 IPR027417 -
Seca11g03947 870 FunFam Disease resistance protein (TIR-NBS-LRR class) 343 425 - -
Seca11g03947 870 Pfam NB-ARC domain 213 411 IPR002182 GO:0043531
Seca11g03947 870 Gene3D - 341 425 IPR042197 -
Seca11g03947 870 Gene3D Ribonuclease Inhibitor 721 869 IPR032675 -
Seca11g03947 870 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 158 IPR035897 -
Seca11g03947 870 SMART till_3 16 155 IPR000157 GO:0007165
Seca11g03947 870 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03947 Seca-Chr11 104242366 104247671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03947 17 807 WRKY Transcription Factor Family AT4G12020 32.270 1.33e-106 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03947 - - aprc:113859619 917.916