Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03940 ATGATGTCGTCGGGGTTCAGACTCCGATGGGACGTGTTTTTGAGCTTCAGAGGCGAAGACACACGCGAGCCATTCACGAAGAGCCTCTACGAGTCACTCCACACTTGTGGGGTTCGTGCTTTCATGGACGACGAAGGATTGCAGCGTGGGGACGAGATAGCACCGTCTCTTCTGGAGGCCATTGATGACTCTGCAGCATCCATTGTGATCATCTCTCCAAACTATGCTTCCTCTCATTGGTGTCTTGAAGAGCTCGCCAGGATTTGCCACTGCGGGAGGCTCGTCCTGCCCGTTTTCTACCGGGTCGACCCGTCTCATGTCCGAAGACAAACGGGTCCATTTGAAACGGATTTTGGGTTTCATGAACAGAGGTTTGCGGAAGAGAAGGTTTTGAAGTGGAGGAAAGCTATGAACAAAGTTGGTGGAGTTGCAGGTTTTGTTTTCAAGGGCAGGTCTGACAGTGAGCATACGGATCTGATTCGCCTTTTGGTGAAGAGGGTTTTGAAGGAGCTGAGTAATACTCCGATGGTTGTGGCTGAGTATGCAGTGGGGCTTGAAGATCGAGTTGGGAAAGTGATGGAGCTTTTACAAGTTGAATCCAATGGTGTTAGAGTTTTGGGGCTGTATGGGATGGGTGGGATTGGTAAGACAACCCTGGCCAAAGCTCTTTTCAATAGCCTTGTTGGTCGTTTTGAGCGTCGCTGCTTCATTTCAAATGTCAAACATTATTCATCCAAAGAAGGTGGTTTGGTTTCTCTTCAAAGCAAAATCATTGGCGATGAAGAAGGGTCAAGAGTTCATATCAGTGATGTTAATGTTGGTATTTCTGCTATTAATCGAGTTCTGCTAGTCTTGGATGATGTTGATGATGTAAACCAACTTGATGCTTTGATTGGTAAGAGGGAATGGTTTTATGAAGGAAGCCGTGTAATAATTACCACAAGGGATAAACATGTTTTGGCCCACAGTCATGTCAATGAGTTGTTTGAAGTTCAGGAATTGTATCCTTCTGAAGCTCTAGAGTTATTCAGTTACCATGCACTGAGGAAAAAAGAACCTCCCAAAGATTTGTTGAATCTGTCAAAGGAAATTGTGTCTCGTACAGGAAGAATGCCTTTGGCTCTGGAAGTGTTTGGTTCCTTTTTGTTTGGTAAGAGGAGGAAGGAGGAATGGAAGGATGCTCTGGAGAAACTGAGGACACCAATTCGTCCTGACAAACTTCAGAATGTGCTGAAGATAAGTTATGATGGTTTAGATGAACAAGAGAAGTGCATATTCCTTGATATTGCTTGTTTCTTTCTCCAAATGGGAATGAAGCGTGAAGATGTAGTTGATATATTGAGAGGTTGTGGTTTTAGGGGAGAGATAGCAATAACAGTCCTTGTAGAAAAATGCTTAATCAAAATCACTCAGGATAACACCCTGTGGATGCATGATCAAATTAGAGACATGGGAAGGCAAATTGTTATAGATGAAAACCATGTTGATCTGGGTATGCGTAGTAGACTGTGGGATCGTGCTGAAATCATGGCTGTTTTAAAGAGTGACAAGGGAACAAGATGTATTCAAGGAATTGTCCTAGACTTTGAGGATCAATTAAAACGATGGAATACAAATTATCTTCAATCTCAAGCAAAGGAAAACAACGAGGTTATACTTCAGACGAAATCCTTTGGACCAATGGTTAACCTGAGACTGCTTCAGATTAATTATCTGAGATTGGAAGGCAAGTACCTTCCAGCTGAACTCAAGTGGCTAAAATGGCGAGGATGTCCTCTAGAATGCATGCCTCTTGACTCTTGGCCTCGAGAGCTGGCTGTCCTTGATCTCTCAAACAGCAACAAAATAAAATACTTGTGGGGACAAGAAGGTGACAAGGTACCACAGAACCTAATGGTCATGAACCTCTCCTACTGCATCCAACTTTCTGCACTCCCTGATTTATCTAAGTGTAGCCATCTAGAGAAGATTGATTTGGAGAGCTGCATTAATCTAACTAGGATCCATGAATCAATTGGCAGTTTGACTAGCTTACGTAGTTTGAATTTGACAAGGTGTTCAAACCTCATTGACCTTCCCAGTGATGTTTGTGGACTGAAACATCTAGAGAACCTCTTTCTTTCTCAATGCTCAAAGTTGAAAGCATTACCCGAAAACATACACAACCTGAAATCTCTGAAAACACTTTTTGCTGATAACACAGCTATATCAGAGCTTCCACAGTTCATTTTCCGCTTGACCAAACTCGAAAGGCTTGTTTTGGATAATTGCCTACGTTTGAGAAGGCTACCAAACTGCATTGGACATCTATGTTCTTTGCAAGAATTATCTCTTGATCAGTCTGGGTTAGAAGAATTACCCAACACTATTGGATCCTTGAAAAACCTTGAGAAATTCAGTATCATTGGGTGTAAATCTCTCACTGTGCTTCCTGAATCTATAGGCAATCTCATATCATTGGAAAAACTTTTGTTTACTAACAGTGGAATTACAGAACTCCCTTCTACCATTGGTTCTTTATCCTATCTGAGGAAGTTATCAGCTGGAAACTGTAAATTTCTCAGTAAACTGCCTCATTCAATGGAAAGTTTGGCCTCAATAGTTGACCTTCAGTTAGATGGAACAACTATCACAAATTTGCCAGATAAGATTGGAGAGATGAAACAACTGAGGAAACTTGAGATTCAGAATTGCAGTCATCTTGAATCTTTACCGGAGTCTATTGGCCACCTTGCATCTCTTACAACACTCAACATAGTCAATGGAAGAATCAGGGAATTGCCAGAGTCCATTGGATTACTGGAAAATCTTGTCACCTTAAGATTGAACAAATGTAGAATGCTTATAAAGCTTCCAGCTTCTATAGGAAATTTGAAATCTCTATGTCACTTTATGATGGAGGAAACGGCTATGACAGATTTACCTGAAAGTTTTGGGATGCTCTCAAGCTTGAGAACTTTGAGAATGGCAAAGAGGCCTCATGTAGTTCCCATTTCAATAGAGGATCCCAGCTCTTTTGTACTACCATCTTCCTTCTGCAATCTGACCTTGCTATATGAGTTGGATGCCCGTGCTTGGAGAATATCTGGAAGGATTCCGGATGATTTTGAGAAGTTATCATTGTTAGAAACTTTGAATTTGGGCCAAAACAATTTTCACAGCCTTCCTTCAAGCTTGAAAGGCCTTTCCATTCTCAAGAAGCTTGCACTGCCAAACTGCAAGGAGCTAATCTCTCTCCCCTCACTTCCTTCAAGTTTGATTGAACTGAACGTTGAAAACTGTTCTGCATTAGAAACCATCCATGACATTTCAAATTTAGAGAGTTTGCAGGAGTTGAAACTCACAAATTGTGAAAAAGTGGTGGATATTCCAGGTCTTGAATGCTTGAAGTCCTTGAGAAGGTTATACTTGAGTGGTTGCACTGCATGCTCCTCCCAAATATGTAAAAGACTCTCAAAGGTTGCTTTGAGGAATTTGGAGAACTTGAGCATGCCAGGAGCCAGATTACCTGAATGGTTTTCAGGACAAACTGTCAGCTTTTCCAAGCCCAAAAATCTTGAACTAAAAGGTGTAGTTGTAGGTGTTATTCTTTCAATCAACCATAACATTGATATACCAAATATAAGGAGAGATGAAATGCCTGGAGTGATTGATGTTCAAGCAAATGTTCTCAAAATGGGCAAAACTATTTTCAGTACAGTGTTAAACATATGTGGGGTTCCAAGGACGGATGAAGAACACATACACTTGTGTAGGTACCAAGATTACCATCAGTTGGTTGCCTTTTTAAGAGATGCTGATACATTTTGTGTGACTATGAGAAGTCCGCGTTTTGATAAGGGGTTGGAGTTGAAAAAATGTGGGGTTCATTTAATCTTTGAAGGGGATGATGATTATGATGGAGATGAAGAATCATTGGACAAAGGCCTGCAATCTGTTTCAGAAAGATTGGCCAAGTTTTTCAACACTTGTGAAGATGGCCATCCCATCTATGCCACTGAGAGTGAAGATGAGTACCAAAAGGAATTGGAGCAGGAACAACAAGAGCCAAGATTATCTCGTACTATTACACTTAAAAGTAATTCCATTCTTCTATTCCTGATCAGTCTATTCTTTGCGCTATTGGGTTGGTTTTGCTTGAGGTGTCATGTAAGTCCCACTCTCAAAACGGCGCAACCATGCTAA 4185 0.4134 MMSSGFRLRWDVFLSFRGEDTREPFTKSLYESLHTCGVRAFMDDEGLQRGDEIAPSLLEAIDDSAASIVIISPNYASSHWCLEELARICHCGRLVLPVFYRVDPSHVRRQTGPFETDFGFHEQRFAEEKVLKWRKAMNKVGGVAGFVFKGRSDSEHTDLIRLLVKRVLKELSNTPMVVAEYAVGLEDRVGKVMELLQVESNGVRVLGLYGMGGIGKTTLAKALFNSLVGRFERRCFISNVKHYSSKEGGLVSLQSKIIGDEEGSRVHISDVNVGISAINRVLLVLDDVDDVNQLDALIGKREWFYEGSRVIITTRDKHVLAHSHVNELFEVQELYPSEALELFSYHALRKKEPPKDLLNLSKEIVSRTGRMPLALEVFGSFLFGKRRKEEWKDALEKLRTPIRPDKLQNVLKISYDGLDEQEKCIFLDIACFFLQMGMKREDVVDILRGCGFRGEIAITVLVEKCLIKITQDNTLWMHDQIRDMGRQIVIDENHVDLGMRSRLWDRAEIMAVLKSDKGTRCIQGIVLDFEDQLKRWNTNYLQSQAKENNEVILQTKSFGPMVNLRLLQINYLRLEGKYLPAELKWLKWRGCPLECMPLDSWPRELAVLDLSNSNKIKYLWGQEGDKVPQNLMVMNLSYCIQLSALPDLSKCSHLEKIDLESCINLTRIHESIGSLTSLRSLNLTRCSNLIDLPSDVCGLKHLENLFLSQCSKLKALPENIHNLKSLKTLFADNTAISELPQFIFRLTKLERLVLDNCLRLRRLPNCIGHLCSLQELSLDQSGLEELPNTIGSLKNLEKFSIIGCKSLTVLPESIGNLISLEKLLFTNSGITELPSTIGSLSYLRKLSAGNCKFLSKLPHSMESLASIVDLQLDGTTITNLPDKIGEMKQLRKLEIQNCSHLESLPESIGHLASLTTLNIVNGRIRELPESIGLLENLVTLRLNKCRMLIKLPASIGNLKSLCHFMMEETAMTDLPESFGMLSSLRTLRMAKRPHVVPISIEDPSSFVLPSSFCNLTLLYELDARAWRISGRIPDDFEKLSLLETLNLGQNNFHSLPSSLKGLSILKKLALPNCKELISLPSLPSSLIELNVENCSALETIHDISNLESLQELKLTNCEKVVDIPGLECLKSLRRLYLSGCTACSSQICKRLSKVALRNLENLSMPGARLPEWFSGQTVSFSKPKNLELKGVVVGVILSINHNIDIPNIRRDEMPGVIDVQANVLKMGKTIFSTVLNICGVPRTDEEHIHLCRYQDYHQLVAFLRDADTFCVTMRSPRFDKGLELKKCGVHLIFEGDDDYDGDEESLDKGLQSVSERLAKFFNTCEDGHPIYATESEDEYQKELEQEQQEPRLSRTITLKSNSILLFLISLFFALLGWFCLRCHVSPTLKTAQPC. 1395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03940 1394 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 173 - -
Seca11g03940 1394 SMART LRR_typ_2 864 887 IPR003591 -
Seca11g03940 1394 SMART LRR_typ_2 1039 1061 IPR003591 -
Seca11g03940 1394 SMART LRR_typ_2 723 746 IPR003591 -
Seca11g03940 1394 SMART LRR_typ_2 817 840 IPR003591 -
Seca11g03940 1394 SMART LRR_typ_2 911 934 IPR003591 -
Seca11g03940 1394 SMART LRR_typ_2 770 793 IPR003591 -
Seca11g03940 1394 SMART LRR_typ_2 675 699 IPR003591 -
Seca11g03940 1394 SUPERFAMILY L domain-like 476 878 - -
Seca11g03940 1394 Gene3D - 3 171 IPR035897 -
Seca11g03940 1394 ProSiteProfiles TIR domain profile. 8 171 IPR000157 GO:0007165
Seca11g03940 1394 Gene3D Ribonuclease Inhibitor 532 715 IPR032675 -
Seca11g03940 1394 SMART till_3 9 143 IPR000157 GO:0007165
Seca11g03940 1394 SMART LRR_bac_2 911 930 - -
Seca11g03940 1394 SMART LRR_bac_2 723 742 - -
Seca11g03940 1394 SMART LRR_bac_2 1039 1058 - -
Seca11g03940 1394 SMART LRR_bac_2 628 648 - -
Seca11g03940 1394 SMART LRR_bac_2 1083 1103 - -
Seca11g03940 1394 PRINTS Disease resistance protein signature 275 289 - -
Seca11g03940 1394 PRINTS Disease resistance protein signature 673 689 - -
Seca11g03940 1394 PRINTS Disease resistance protein signature 368 382 - -
Seca11g03940 1394 PRINTS Disease resistance protein signature 205 220 - -
Seca11g03940 1394 Pfam NB-ARC domain 186 412 IPR002182 GO:0043531
Seca11g03940 1394 Gene3D - 334 419 IPR042197 -
Seca11g03940 1394 Gene3D Ribonuclease Inhibitor 871 1083 IPR032675 -
Seca11g03940 1394 Gene3D Ribonuclease Inhibitor 716 870 IPR032675 -
Seca11g03940 1394 Gene3D Ribonuclease Inhibitor 1084 1187 IPR032675 -
Seca11g03940 1394 SUPERFAMILY L domain-like 857 1171 - -
Seca11g03940 1394 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 145 IPR035897 -
Seca11g03940 1394 Gene3D - 172 328 IPR027417 -
Seca11g03940 1394 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 765 IPR044974 GO:0006952
Seca11g03940 1394 SMART LRR_CC_2 651 678 IPR006553 -
Seca11g03940 1394 SMART LRR_CC_2 793 820 IPR006553 -
Seca11g03940 1394 SMART LRR_CC_2 840 867 IPR006553 -
Seca11g03940 1394 SMART LRR_CC_2 887 914 IPR006553 -
Seca11g03940 1394 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 429 IPR027417 -
Seca11g03940 1394 Pfam TIR domain 10 174 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03940 Seca-Chr11 103841617 103848279 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03940 10 828 WRKY Transcription Factor Family AT4G12020 30.724 7.75e-82 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03940 - - mtr:11408681 1976.83